Fish Transcriptome and Expression Database

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model fish

XLOC_006817

Basic Information

Item	Value
gene id	XLOC_006817
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007124.7
NCBI id	CM002897.2
chromosome length	52186027
location	37110212 ~ 37110536 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013499
AGTGCATCATACTagtgTTGGGCTGTTtataaaaatgtagttaaatgGTAGTTAAATGGTAGTgctatttaaataagtagttagtTAAGTGGGTagtctgtatttaatttaaatttatgaatGCAACCAGATTGTCTCTACATATTATTTGTGTCAAATTTTAATtggtcattttaaatgattaaaactcattaataagttatatattt

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00013499	True	209	lncRNA	0.25	2	37110212	37110536

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_006815	NA	coding	downstream	97976	37009812 ~ 37012236 (-)
XLOC_006814	NA	coding	downstream	112452	36995633 ~ 36997760 (-)
XLOC_006813	trim9	coding	downstream	199094	36868365 ~ 36911118 (-)
XLOC_006812	pygl	coding	downstream	247173	36846789 ~ 36863039 (-)
XLOC_006811	nin	coding	downstream	265267	36800334 ~ 36844945 (-)
XLOC_006818	si:dkeyp-77c8.1	coding	upstream	61440	37171976 ~ 37180815 (-)
XLOC_006819	AL845493.1	coding	upstream	68066	37178602 ~ 37178716 (-)
XLOC_006820	si:dkeyp-77c8.2	coding	upstream	75767	37186303 ~ 37189560 (-)
XLOC_006821	si:dkeyp-77c8.3	coding	upstream	88762	37199298 ~ 37200120 (-)
XLOC_006822	si:dkeyp-77c8.4	coding	upstream	97924	37208460 ~ 37210369 (-)
XLOC_006471	BX537274.2	misc	downstream	26845307	10264741 ~ 10264905 (-)
XLOC_006338	rn7sk	misc	downstream	36283987	825904 ~ 826225 (-)
XLOC_006804	BX927407.1	non-coding	downstream	498053	36587770 ~ 36612159 (-)
XLOC_006797	CR361558.1	non-coding	downstream	710837	36399260 ~ 36399375 (-)
XLOC_006785	BX510990.1	non-coding	downstream	1147746	35962350 ~ 35962466 (-)
XLOC_006829	NA	non-coding	upstream	417625	37528161 ~ 37535785 (-)
XLOC_006836	NA	non-coding	upstream	522090	37632626 ~ 37636598 (-)
XLOC_006842	NA	non-coding	upstream	1079985	38190521 ~ 38195214 (-)
XLOC_006843	NA	non-coding	upstream	1502689	38613225 ~ 38619719 (-)

Expression

Co-expression Network