XLOC_006812 (pygl)


Basic Information

Item Value
gene id XLOC_006812
gene name pygl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36846789 ~ 36863039 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013111
GTGTGTCTGCCGCTGTTCAGGATGGCGACTCCTCTCACAGACCAGGAGAAGCGCAAGCAGATCAGCATCAGGGGGATCGTCGGTGTGGAGAATGTGGCCGAGCTGAAGAAAGGTTTCAACCGGCACCTGCACTTCACGCTCGTCAAGGACCGGAACGTCGCGACGCCGCGGGATTATTATTTCGCGCTGTCGCACACGGTGCGCGATCACCTGGTGGGTCGCTGGATCCGCACACAGCAGTTCTGCTATGAAGCTGACCCGAAGCGTGTTTATTACCTCTCACTGGAGTTCTACATGGGTCGCACGCTCCAGAACACCATGATCAATCTGGGTCTGCAGAACGCCTGTGATGAGGCCATCTATCAGCTGGGCTTGGACATGGAGGATCTGGAGGAGATGGAAGAAGATGCTGGATTAGGCAATGGAGGCCTGGGCAGATTAGCAgCATGTTTTCTAGACTCAATGGCGACTCTGGGTCTGGCAGCCTATGGATATGGGATACGATATGAATATGGAATATTCAACCAGAAGATTAAAGATGGCTGGCAGGTTGAAGAGGCGGATGACTGGTTAAGGTATGGTAACCCGTGGGAAAAGGCCCGTCCTGAGTTCATGCTGCCTGTGCATTTCTATGGTCGTGTGGAAGAAGAGGAGGGAAAGGAGCCGAAATGGGTAGACACACAGGTGGTTTTGGCCATGCCATATGACACGCCAATTCCAGGTTACATGAACAATACAGTGAACACCATGCGCCTGTGGTCTGCCCGCGCACCAAATGACTTCAACCTCAGAGACTttaacGTGGGTGATTACATTCAGGCAGTTTTGGACCGTAACTTAGCAGAAAACATTTCCCGTGTGCTTTATCCAAATGACAATTTTTTTGAGGGAAAGGAGCTGCGTTTAAAGCAGGAATATTTTGTGGTGGCAGCAACTTTACAAGATGTGATTCGACGCTTTAAGACCTCGAAGAGAAACACTTCTGGACCGTTGTCATTCGACAGCTTCCCtgataaggttgCCATCCAGCTGAATGATACTCATCCCGCTATGGCCATTCCTGAGTTGATGCGGATATTTGTGGACATTGAGAAGCTTGACTGGGACACAGCCTGGGATATCACCAAGCGAACGTTTGCTTACACAAACCACACGGTTCTGCCAGAGGCTCTGGAACGCTGGCCAGTTGATCTGATGGAGAAACTCTTACCGCGACACCTGCAGATCATATACAAGATCAACCTAATACACCTGAATCATATAGCGTCTCTGTTTCCAGAGGATATGGACCGAATCCGCAGGATGTCTCTGATCGAGGAAGGAGGAGGGAAGCGAGTGAACATGGCCCATCTCTGCATTGTGGGCTCACACAAAGTCAATGGAGTAGCAAAGATTCACTCTGACATCATCAAGAGAGACGTGTTCCAGGATTTCAGTGAGCTGGAACCGGAGAAATTTCAGAATAAAACCAATGGCATCACACCACGACGCTGGCTGCTTCTCTGTAACCCAGGACTTGCTGATCTAATTGCCGAGgcTATCGGTGAGGAGTATGTGAAAGATCTGACTCAGCTGCAGAAGCTGAATGATCTGGTTGATGACGAAGCCTTCATCCGAGATGTAGCCAAAGTCAAACAGGACAACAAGCTGAAGTTTGCACATTATTTAGAGAAGATCTACAAAGTGGACATAAATCCTGCCTCCATGTTTGATGTCCATGTTAAAAGAATCCACGAATACAAACGGCAGCTGCTCAACTGCCTCCACGTCATCACCATGTACAACCgcatcaagagcCATCCTACTAAACCATTTATACCCCGGACTGTGATCATTGGAGGCAAGGCTGCTCCTGGATATCACATGGCAAAGATGATCATTAAACTGATTACTTCAGTCGCTGATGTGGTCAATAATGATCCTGTGATTGGACGTAAACTGAAGGTCATTTTTCTGGAGAACTACAGAGTGTCACTGGCAGAGAAAGTAATCCCAGCCACAGACCTGTCGGAGCAGATCTCCACTGCGGGTACAGAGGCGTCTGGAACCGGAAACATGAAATTCATGCTGAATGGAGCGCTCACTATTGGCACAATGGATGGTGCCAATGTGGAAATGGCAGAAGAAGCCGGAGAGGAAAACCTCTTCATCTTTGGCATGAGGGTGAATGATGTGGCAGAGCTGGATAAAAAAGGCTATAATGCACTGCAATATTATGAGAATCTTTCGGAGCTGAAACGAGCCATTAATCAGATTAAAAGTGGCTATTTTTCACCGAAACAGCCTGAGATGTTCAGCGACATCATCAACATGCTGTTTCATCACGATCGGTTTAAAGTTTTTGCTGATTATGAGTCTTATGTGAAGTGTCAAGACCGAGTCAGCGCTCTGTATAAGGATCAGAGAGAGTGGACTCGGGTGGTGATTAAGAACATCGCCGCATCTGGAAAGTTCTCCAGCGACCGCACTATTACAGAGTACGCCACTGAGATCTGGGGTGTGGAGCCCACTGACCTGAAGATTCCTCCACCAGGCGAACCTCGTGAAGCTCTAGAGGAAACTGCACGCTCCCTGCGCAAGACCTGAAGACAAGATCATCAGATCACCTCCAACAGTAGTTATAacgctaaataaataaatctcactatcaatttGTTTCAATTTTTCATGCAGTActctttaaatgaatgaattgtactGCAAAACGCCTGAATAAATG
>TCONS_00013112
ATGGCGACTCCTCTCACAGACCAGGAGAAGCGCAAGCAGATCAGCATCAGGGGGATCGTCGGTGTGGAGAATGTGGCCGAGCTGAAGAAAGGTTTCAACCGGCACCTGCACTTCACGCTCGTCAAGGACCGGAACGTCGCGACGCCGCGGGATTATTATTTCGCGCTGTCGCACACGGTGCGCGATCACCTGGTGGGTCGCTGGATCCGCACACAGCAGTTCTGCTATGAAGCTGACCCGAAGCGTGTTTATTACCTCTCACTGGAGTTCTACATGGGTCGCACGCTCCAGAACACCATGATCAATCTGGGTCTGCAGAACGCCTGTGATGAGGCCATCTATCAGGTCAGGGAACACAAAAACACTCATTTGTCTGTGCGTCTGTTTGCCTATCAGTCTGTAATCCTCTTGTTCTCCTTCCAGCTGGGCTTGGACATGGAGGATCTGGAGGAGATGGAAGAAGATGCTGGATTAGGCAATGGAGGCCTGGGCAGATTAGCAgCATGTTTTCTAGACTCAATGGCGACTCTGGGTCTGGCAGCCTATGGATATGGGATACGATATGAATATGGAATATTCAACCAGAAGATTAAAGATGGCTGGCAGGTTGAAGAGGCGGATGACTGGTTAAGGTATGGTAACCCGTGGGAAAAGGCCCGTCCTGAGTTCATGCTGCCTGTGCATTTCTATGGTCGTGTGGAAGAAGAGGAGGGAAAGGAGCCGAAATGGGTAGACACACAGGTGGTTTTGGCCATGCCATATGACACGCCAATTCCAGGTTACATGAACAATACAGTGAACACCATGCGCCTGTGGTCTGCCCGCGCACCAAATGACTTCAACCTCAGAGACTttaacGTGGGTGATTACATTCAGGCAGTTTTGGACCGTAACTTAGCAGAAAACATTTCCCGTGTGCTTTATCCAAATGACAATTTTTTTGAGGGAAAGGAGCTGCGTTTAAAGCAGGAATATTTTGTGGTGGCAGCAACTTTACAAGATGTGATTCGACGCTTTAAGACCTCGAAGAGAAACACTTCTGGACCGTTGTCATTCGACAGCTTCCCtgataaggttgCCATCCAGCTGAATGATACTCATCCCGCTATGGCCATTCCTGAGTTGATGCGGATATTTGTGGACATTGAGAAGCTTGACTGGGACACAGCCTGGGATATCACCAAGCGAACGTTTGCTTACACAAACCACACGGTTCTGCCAGAGGCTCTGGAACGCTGGCCAGTTGATCTGATGGAGAAACTCTTACCGCGACACCTGCAGATCATATACAAGATCAACCTAATACACCTGAATCATATAGCGTCTCTGTTTCCAGAGGATATGGACCGAATCCGCAGGATGTCTCTGATCGAGGAAGGAGGAGGGAAGCGAGTGAACATGGCCCATCTCTGCATTGTGGGCTCACACAAAGTCAATGGAGTAGCAAAGATTCACTCTGACATCATCAAGAGAGACGTGTTCCAGGATTTCAGTGAGCTGGAACCGGAGAAATTTCAGAATAAAACCAATGGCATCACACCACGACGCTGGCTGCTTCTCTGTAACCCAGGACTTGCTGATCTAATTGCCGAGgcTATCGGTGAGGAGTATGTGAAAGATCTGACTCAGCTGCAGAAGCTGAATGATCTGGTTGATGACGAAGCCTTCATCCGAGATGTAGCCAAAGTCAAACAGGACAACAAGCTGAAGTTTGCACATTATTTAGAGAAGATCTACAAAGTGGACATAAATCCTGCCTCCATGTTTGATGTCCATGTTAAAAGAATCCACGAATACAAACGGCAGCTGCTCAACTGCCTCCACGTCATCACCATGTACAACCgcatcaagagcCATCCTACTAAACCATTTATACCCCGGACTGTGATCATTGGAGGCAAGGCTGCTCCTGGATATCACATGGCAAAGATGATCATTAAACTGATTACTTCAGTCGCTGATGTGGTCAATAATGATCCTGTGATTGGACGTAAACTGAAGGTCATTTTTCTGGAGAACTACAGAGTGTCACTGGCAGAGAAAGTAATCCCAGCCACAGACCTGTCGGAGCAGATCTCCACTGCGGGTACAGAGGCGTCTGGAACCGGAAACATGAAATTCATGCTGAATGGAGCGCTCACTATTGGCACAATGGATGGTGCCAATGTGGAAATGGCAGAAGAAGCCGGAGAGGAAAACCTCTTCATCTTTGGCATGAGGGTGAATGATGTGGCAGAGCTGGATAAAAAAGGCTATAATGCACTGCAATATTATGAGAATCTTTCGGAGCTGAAACGAGCCATTAATCAGATTAAAAGTGGCTATTTTTCACCGAAACAGCCTGAGATGTTCAGCGACATCATCAACATGCTGTTTCATCACGATCGGTTTAAAGTTTTTGCTGATTATGAGTCTTATGTGAAGTGTCAAGACCGAGTCAGCGCTCTGTATAAGGATCAGAGAGAGTGGACTCGGGTGGTGATTAAGAACATCGCCGCATCTGGAAAGTTCTCCAGCGACCGCACTATTACAGAGTACGCCACTGAGATCTGGGGTGTGGAGCCCACTGACCTGAAGATTCCTCCACCAGGCGAACCTCGTGAAGCTCTAGAGGAAACTGCACGCTCCCTGCGCAAGACCTGA

Function

symbol description
pygl Predicted to enable glycogen phosphorylase activity and pyridoxal phosphate binding activity. Predicted to be involved in glycogen catabolic process. Predicted to act upstream of or within glycogen metabolic process. Predicted to be active in cytoplasm. Is expressed in eye; heart; kidney; liver; and muscle. Human ortholog(s) of this gene implicated in glycogen storage disease; glycogen storage disease VI; and lactic acidosis. Orthologous to human PYGL (glycogen phosphorylase L).

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0102499 SHG alpha-glucan phosphorylase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0102250 linear malto-oligosaccharide phosphorylase activity molecular_function
GO:0008184 glycogen phosphorylase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0004645 1,4-alpha-oligoglucan phosphorylase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041205-1 Predicted to enable glycogen phosphorylase activity and pyridoxal phosphate binding activity. Predicted to be involved in glycogen catabolic process. Predicted to act upstream of or within glycogen metabolic process. Predicted to be active in cytoplasm. Is expressed in eye; heart; kidney; liver; and muscle. Human ortholog(s) of this gene implicated in glycogen storage disease; glycogen storage disease VI; and lactic acidosis. Orthologous to human PYGL (glycogen phosphorylase L).

Ensembl:

ensembl_id ENSDARG00000002197

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013111 False 2719 mRNA 0.48 20 36846789 36863039
TCONS_00013112 True 2643 mRNA 0.49 19 36846922 36863018

Neighbor

gene id symbol gene type direction distance location
XLOC_006811 nin coding downstream 1844 36800334 ~ 36844945 (-)
XLOC_006810 sav1 coding downstream 48585 36787077 ~ 36798204 (-)
XLOC_006809 map4k5 coding downstream 85335 36705595 ~ 36761454 (-)
XLOC_006808 cdkl1 coding downstream 143625 36693152 ~ 36703164 (-)
XLOC_006807 l2hgdh coding downstream 166258 36666662 ~ 36680531 (-)
XLOC_006813 trim9 coding upstream 5326 36868365 ~ 36911118 (-)
XLOC_006814 NA coding upstream 132594 36995633 ~ 36997760 (-)
XLOC_006815 NA coding upstream 146773 37009812 ~ 37012236 (-)
XLOC_006816 syne2b coding upstream 212283 37075322 ~ 37127970 (-)
XLOC_006817 NA coding upstream 247173 37110212 ~ 37110536 (-)
XLOC_006471 BX537274.2 misc downstream 26581884 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 36020564 825904 ~ 826225 (-)
XLOC_006804 BX927407.1 non-coding downstream 234630 36587770 ~ 36612159 (-)
XLOC_006797 CR361558.1 non-coding downstream 447414 36399260 ~ 36399375 (-)
XLOC_006785 BX510990.1 non-coding downstream 884323 35962350 ~ 35962466 (-)
XLOC_006784 NA non-coding downstream 921305 35925042 ~ 35925484 (-)
XLOC_006779 BX663524.1 non-coding downstream 1254412 35592242 ~ 35592377 (-)
XLOC_006819 AL845493.1 non-coding upstream 315563 37178602 ~ 37178716 (-)
XLOC_006829 NA non-coding upstream 665122 37528161 ~ 37535785 (-)

Expression


Co-expression Network