RNA id: TCONS_00013111


Basic Information

Item Value
RNA id TCONS_00013111
length 2719
RNA type mRNA
GC content 0.48
exon number 20
gene id XLOC_006812
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36846789 ~ 36863039 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTGTCTGCCGCTGTTCAGGATGGCGACTCCTCTCACAGACCAGGAGAAGCGCAAGCAGATCAGCATCAGGGGGATCGTCGGTGTGGAGAATGTGGCCGAGCTGAAGAAAGGTTTCAACCGGCACCTGCACTTCACGCTCGTCAAGGACCGGAACGTCGCGACGCCGCGGGATTATTATTTCGCGCTGTCGCACACGGTGCGCGATCACCTGGTGGGTCGCTGGATCCGCACACAGCAGTTCTGCTATGAAGCTGACCCGAAGCGTGTTTATTACCTCTCACTGGAGTTCTACATGGGTCGCACGCTCCAGAACACCATGATCAATCTGGGTCTGCAGAACGCCTGTGATGAGGCCATCTATCAGCTGGGCTTGGACATGGAGGATCTGGAGGAGATGGAAGAAGATGCTGGATTAGGCAATGGAGGCCTGGGCAGATTAGCAgCATGTTTTCTAGACTCAATGGCGACTCTGGGTCTGGCAGCCTATGGATATGGGATACGATATGAATATGGAATATTCAACCAGAAGATTAAAGATGGCTGGCAGGTTGAAGAGGCGGATGACTGGTTAAGGTATGGTAACCCGTGGGAAAAGGCCCGTCCTGAGTTCATGCTGCCTGTGCATTTCTATGGTCGTGTGGAAGAAGAGGAGGGAAAGGAGCCGAAATGGGTAGACACACAGGTGGTTTTGGCCATGCCATATGACACGCCAATTCCAGGTTACATGAACAATACAGTGAACACCATGCGCCTGTGGTCTGCCCGCGCACCAAATGACTTCAACCTCAGAGACTttaacGTGGGTGATTACATTCAGGCAGTTTTGGACCGTAACTTAGCAGAAAACATTTCCCGTGTGCTTTATCCAAATGACAATTTTTTTGAGGGAAAGGAGCTGCGTTTAAAGCAGGAATATTTTGTGGTGGCAGCAACTTTACAAGATGTGATTCGACGCTTTAAGACCTCGAAGAGAAACACTTCTGGACCGTTGTCATTCGACAGCTTCCCtgataaggttgCCATCCAGCTGAATGATACTCATCCCGCTATGGCCATTCCTGAGTTGATGCGGATATTTGTGGACATTGAGAAGCTTGACTGGGACACAGCCTGGGATATCACCAAGCGAACGTTTGCTTACACAAACCACACGGTTCTGCCAGAGGCTCTGGAACGCTGGCCAGTTGATCTGATGGAGAAACTCTTACCGCGACACCTGCAGATCATATACAAGATCAACCTAATACACCTGAATCATATAGCGTCTCTGTTTCCAGAGGATATGGACCGAATCCGCAGGATGTCTCTGATCGAGGAAGGAGGAGGGAAGCGAGTGAACATGGCCCATCTCTGCATTGTGGGCTCACACAAAGTCAATGGAGTAGCAAAGATTCACTCTGACATCATCAAGAGAGACGTGTTCCAGGATTTCAGTGAGCTGGAACCGGAGAAATTTCAGAATAAAACCAATGGCATCACACCACGACGCTGGCTGCTTCTCTGTAACCCAGGACTTGCTGATCTAATTGCCGAGgcTATCGGTGAGGAGTATGTGAAAGATCTGACTCAGCTGCAGAAGCTGAATGATCTGGTTGATGACGAAGCCTTCATCCGAGATGTAGCCAAAGTCAAACAGGACAACAAGCTGAAGTTTGCACATTATTTAGAGAAGATCTACAAAGTGGACATAAATCCTGCCTCCATGTTTGATGTCCATGTTAAAAGAATCCACGAATACAAACGGCAGCTGCTCAACTGCCTCCACGTCATCACCATGTACAACCgcatcaagagcCATCCTACTAAACCATTTATACCCCGGACTGTGATCATTGGAGGCAAGGCTGCTCCTGGATATCACATGGCAAAGATGATCATTAAACTGATTACTTCAGTCGCTGATGTGGTCAATAATGATCCTGTGATTGGACGTAAACTGAAGGTCATTTTTCTGGAGAACTACAGAGTGTCACTGGCAGAGAAAGTAATCCCAGCCACAGACCTGTCGGAGCAGATCTCCACTGCGGGTACAGAGGCGTCTGGAACCGGAAACATGAAATTCATGCTGAATGGAGCGCTCACTATTGGCACAATGGATGGTGCCAATGTGGAAATGGCAGAAGAAGCCGGAGAGGAAAACCTCTTCATCTTTGGCATGAGGGTGAATGATGTGGCAGAGCTGGATAAAAAAGGCTATAATGCACTGCAATATTATGAGAATCTTTCGGAGCTGAAACGAGCCATTAATCAGATTAAAAGTGGCTATTTTTCACCGAAACAGCCTGAGATGTTCAGCGACATCATCAACATGCTGTTTCATCACGATCGGTTTAAAGTTTTTGCTGATTATGAGTCTTATGTGAAGTGTCAAGACCGAGTCAGCGCTCTGTATAAGGATCAGAGAGAGTGGACTCGGGTGGTGATTAAGAACATCGCCGCATCTGGAAAGTTCTCCAGCGACCGCACTATTACAGAGTACGCCACTGAGATCTGGGGTGTGGAGCCCACTGACCTGAAGATTCCTCCACCAGGCGAACCTCGTGAAGCTCTAGAGGAAACTGCACGCTCCCTGCGCAAGACCTGAAGACAAGATCATCAGATCACCTCCAACAGTAGTTATAacgctaaataaataaatctcactatcaatttGTTTCAATTTTTCATGCAGTActctttaaatgaatgaattgtactGCAAAACGCCTGAATAAATG

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0102499 SHG alpha-glucan phosphorylase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0102250 linear malto-oligosaccharide phosphorylase activity molecular_function
GO:0008184 glycogen phosphorylase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0004645 1,4-alpha-oligoglucan phosphorylase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041205-1 Predicted to enable glycogen phosphorylase activity and pyridoxal phosphate binding activity. Predicted to be involved in glycogen catabolic process. Predicted to act upstream of or within glycogen metabolic process. Predicted to be active in cytoplasm. Is expressed in eye; heart; kidney; liver; and muscle. Human ortholog(s) of this gene implicated in glycogen storage disease; glycogen storage disease VI; and lactic acidosis. Orthologous to human PYGL (glycogen phosphorylase L).

Ensembl:

ensembl_id ENSDART00000149011

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013101 lncRNA downstream 224864 36613162 ~ 36621925 (-) True XLOC_006805
TCONS_00013099 lncRNA downstream 234630 36587770 ~ 36612159 (-) True XLOC_006804
TCONS_00013096 lncRNA downstream 264508 36568947 ~ 36582281 (-) False XLOC_006803
TCONS_00013088 lncRNA downstream 311717 36530230 ~ 36535072 (-) False XLOC_006800
TCONS_00013873 lncRNA upstream 132594 36995633 ~ 36997760 (-) True XLOC_006814
TCONS_00013498 lncRNA upstream 146773 37009812 ~ 37012236 (-) True XLOC_006815
TCONS_00013499 lncRNA upstream 247173 37110212 ~ 37110536 (-) True XLOC_006817
TCONS_00013136 lncRNA upstream 665122 37528161 ~ 37535327 (-) False XLOC_006829
TCONS_00013135 lncRNA upstream 665122 37528161 ~ 37535424 (-) False XLOC_006829
TCONS_00013109 mRNA downstream 1844 36800334 ~ 36844945 (-) False XLOC_006811
TCONS_00013110 mRNA downstream 1844 36809113 ~ 36844945 (-) True XLOC_006811
TCONS_00013108 mRNA downstream 48585 36787077 ~ 36798204 (-) True XLOC_006810
TCONS_00013105 mRNA downstream 85335 36705595 ~ 36761454 (-) False XLOC_006809
TCONS_00013106 mRNA downstream 85410 36740471 ~ 36761379 (-) False XLOC_006809
TCONS_00013113 mRNA upstream 5326 36868365 ~ 36911118 (-) True XLOC_006813
TCONS_00013114 mRNA upstream 212283 37075322 ~ 37127970 (-) False XLOC_006816
TCONS_00013115 mRNA upstream 214943 37077982 ~ 37108310 (-) False XLOC_006816
TCONS_00013116 mRNA upstream 227643 37090682 ~ 37102522 (-) False XLOC_006816
TCONS_00013117 mRNA upstream 230387 37093426 ~ 37103126 (-) False XLOC_006816
TCONS_00013107 other downstream 85473 36757555 ~ 36761316 (-) True XLOC_006809
TCONS_00013090 other downstream 311717 36530420 ~ 36535072 (-) False XLOC_006800
TCONS_00013082 other downstream 447414 36399260 ~ 36399375 (-) True XLOC_006797
TCONS_00013079 other downstream 455298 36321091 ~ 36391491 (-) False XLOC_006796
TCONS_00013121 other upstream 315563 37178602 ~ 37178716 (-) True XLOC_006819
TCONS_00013139 other upstream 731476 37594515 ~ 37600539 (-) False XLOC_006831
TCONS_00013140 other upstream 735672 37598711 ~ 37599245 (-) True XLOC_006831
TCONS_00013157 other upstream 787634 37650673 ~ 37656690 (-) False XLOC_006839
TCONS_00013167 other upstream 1990098 38853137 ~ 38853252 (-) True XLOC_006846

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU82219 True 2762 lncRNA 0.48 20 CI01000012 4966750 ~ 4976926 (-)
eurasian perch (Perca fluviatilis) TU82219 True 455 TUCP 0.47 1 NC_053117.1 14283417 ~ 14283871 (+)
tiger barb (Puntius tetrazona) TU82219 False 1821 lncRNA 0.43 4 NC_056705.1 23185074 ~ 23221224 (+)