RNA id: TCONS_00013140


Basic Information

Item Value
RNA id TCONS_00013140
length 265
RNA type processed_transcript
GC content 0.46
exon number 2
gene id XLOC_006831
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 37586491 ~ 37600600 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attgtaggAAGGTCGCtgaggcaacgttgtgtgtttgttgatATATCCACTAATCTATATTAGAAAACGCAGTGCTTGTGGCTGATCAGCAACATTTCATGACCGATTGATTTGGTAAACAAGAGCCAAGAGAGAAAAGGATTTTTGCTCGTCTGGTTCTGTCTGTGGCGTGTCAGTATTTCTTCCCTCCATTCACTTTCCAGATCAGAGTCGGGGCCCTTTATCTGCTGTATGGGCTCTACAACACACAGCTCGCCACACCCAG

Function

GO:

id name namespace
GO:0042795 snRNA transcription by RNA polymerase II biological_process
GO:0042796 snRNA transcription by RNA polymerase III biological_process
GO:0019185 snRNA-activating protein complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-716 Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be part of snRNA-activating protein complex. Orthologous to human SNAPC1 (small nuclear RNA activating complex polypeptide 1).

Ensembl:

ensembl_id ENSDART00000135467

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013874 lncRNA downstream 62926 37528161 ~ 37535785 (-) True XLOC_006829
TCONS_00013135 lncRNA downstream 63287 37528161 ~ 37535424 (-) False XLOC_006829
TCONS_00013136 lncRNA downstream 63384 37528161 ~ 37535327 (-) False XLOC_006829
TCONS_00013499 lncRNA downstream 488175 37110212 ~ 37110536 (-) True XLOC_006817
TCONS_00013498 lncRNA downstream 586475 37009812 ~ 37012236 (-) True XLOC_006815
TCONS_00013142 lncRNA upstream 7812 37607057 ~ 37608372 (-) True XLOC_006832
TCONS_00013145 lncRNA upstream 10559 37609804 ~ 37613031 (-) False XLOC_006833
TCONS_00013144 lncRNA upstream 10559 37609804 ~ 37614979 (-) True XLOC_006833
TCONS_00013876 lncRNA upstream 33381 37632626 ~ 37636598 (-) False XLOC_006836
TCONS_00013875 lncRNA upstream 33381 37632626 ~ 37636598 (-) False XLOC_006836
TCONS_00013137 mRNA downstream 53224 37543498 ~ 37545487 (-) True XLOC_006830
TCONS_00013134 mRNA downstream 78894 37493729 ~ 37519817 (-) True XLOC_006828
TCONS_00013133 mRNA downstream 78937 37491804 ~ 37519774 (-) False XLOC_006828
TCONS_00013132 mRNA downstream 123722 37469093 ~ 37474989 (-) True XLOC_006827
TCONS_00013131 mRNA downstream 133169 37430202 ~ 37465542 (-) True XLOC_006826
TCONS_00013141 mRNA upstream 6651 37605896 ~ 37608441 (-) False XLOC_006832
TCONS_00013143 mRNA upstream 10213 37609458 ~ 37615029 (-) False XLOC_006833
TCONS_00013146 mRNA upstream 18273 37617518 ~ 37620091 (-) False XLOC_006834
TCONS_00013147 mRNA upstream 18275 37617520 ~ 37620194 (-) False XLOC_006834
TCONS_00013148 mRNA upstream 18275 37617520 ~ 37620290 (-) False XLOC_006834
TCONS_00013121 other downstream 419995 37178602 ~ 37178716 (-) True XLOC_006819
TCONS_00013107 other downstream 837395 36757555 ~ 36761316 (-) True XLOC_006809
TCONS_00013090 other downstream 1063639 36530420 ~ 36535072 (-) False XLOC_006800
TCONS_00013082 other downstream 1199336 36399260 ~ 36399375 (-) True XLOC_006797
TCONS_00013081 other downstream 1267812 36321431 ~ 36330899 (-) True XLOC_006796
TCONS_00013157 other upstream 51428 37650673 ~ 37656690 (-) False XLOC_006839
TCONS_00013167 other upstream 1253892 38853137 ~ 38853252 (-) True XLOC_006846
TCONS_00013170 other upstream 1643310 39242555 ~ 39242672 (-) True XLOC_006848
TCONS_00013199 other upstream 3631048 41230293 ~ 41230409 (-) True XLOC_006866
TCONS_00013200 other upstream 4063727 41662972 ~ 41663088 (-) True XLOC_006867