XLOC_006830 (syt16)


Basic Information

Item Value
gene id XLOC_006830
gene name syt16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 37543498 ~ 37545487 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013137
TAGACGCACAGACCTCTTTGAGCACTCAGACTGACAGTGCTTCCTCCAGTCTGTCTGTGTCTCACGCTGGAAATCCAGAACTGCTGCTGGGTTTATCCTACAACGCCACCACAGGACGACTTTCTGTGGAGATCATTAAAGGCAGCCACTTCCGTAACTTTGCAGTCAACAGACCTCCAGATACATTTGGTAAGCTCACTCTGTTGAACTCAATGGGACAGGAGATTTCCCGCTGTAAGACGTCGATCCGTCGCAGCCAGCCCAATCCTGTCTTCAAGGAGACGTTCGTCTTCCAGGTGGCGCTTTTCCAACTGTCTGACGTCACGTTAATGGTCTCCATTTACAATCGGCGGAACATGAAGCGTAAGGAGATGATAGGCTGGGTGGCTCTGGGCCAGAACAGCAGCGGTGAAGAGGAGCTTCTTCACTGGCAGGACATGAAGGAGAGCGGAAACCAACAGGTCTGCCGCTGGCACACGCTGCTGGATGCTTAG

Function

symbol description
syt16 Predicted to act upstream of or within exocytosis. Orthologous to human SYT16 (synaptotagmin 16).

GO:

id name namespace
GO:0006887 exocytosis biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-210 Predicted to act upstream of or within exocytosis. Orthologous to human SYT16 (synaptotagmin 16).

Ensembl:

ensembl_id ENSDARG00000030761

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013137 True 494 mRNA 0.53 2 37543498 37545487

Neighbor

gene id symbol gene type direction distance location
XLOC_006829 NA coding downstream 7713 37528161 ~ 37535785 (-)
XLOC_006828 sgpp1 coding downstream 23681 37491804 ~ 37519817 (-)
XLOC_006827 wdr89 coding downstream 68509 37469093 ~ 37474989 (-)
XLOC_006826 ppp2r5eb coding downstream 77956 37421333 ~ 37465542 (-)
XLOC_006825 kcnh5b coding downstream 159873 37302575 ~ 37383625 (-)
XLOC_006831 snapc1b coding upstream 41004 37586491 ~ 37600600 (-)
XLOC_006832 ifi45 coding upstream 60409 37605896 ~ 37608441 (-)
XLOC_006833 si:dkey-188i13.6 coding upstream 63971 37609458 ~ 37615029 (-)
XLOC_006834 zgc:152791 coding upstream 72031 37617518 ~ 37620290 (-)
XLOC_006835 ifi46 coding upstream 77789 37623276 ~ 37631092 (-)
XLOC_006471 BX537274.2 misc downstream 27278593 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 36717273 825904 ~ 826225 (-)
XLOC_006819 AL845493.1 non-coding downstream 364782 37178602 ~ 37178716 (-)
XLOC_006817 NA non-coding downstream 432962 37110212 ~ 37110536 (-)
XLOC_006815 NA non-coding downstream 531262 37009812 ~ 37012236 (-)
XLOC_006814 NA non-coding downstream 545738 36995633 ~ 36997760 (-)
XLOC_006836 NA non-coding upstream 87139 37632626 ~ 37636598 (-)
XLOC_006842 NA non-coding upstream 645034 38190521 ~ 38195214 (-)
XLOC_006843 NA non-coding upstream 1067738 38613225 ~ 38619719 (-)
XLOC_006846 BX323574.1 non-coding upstream 1307650 38853137 ~ 38853252 (-)
XLOC_006848 BX324188.2 non-coding upstream 1697068 39242555 ~ 39242672 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_04514814_04539220 SYT16 coding CI01000012 null 4514814 ~ 4539599 (+)