RNA id: TCONS_00013875


Basic Information

Item Value
RNA id TCONS_00013875
length 2464
lncRNA type sense_over
GC content 0.38
exon number 4
gene id XLOC_006836
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 37632626 ~ 37636598 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgtAAATCTATTTATAGacactaaaatattatttcattattgtaATTAAATGTTGTGGAAACTGCACCATATTTAGCTGAGGCAAGCACTTTAGCCTATCTTTCTCTGGCTTTACTTACAATAAACAGTCATCTTTTGATATCGGTGGATGCAGCACTGATTGTTCCATGTGAACAGATGAGCTGATGTTCTCGTTATTGTGTGATGCCTGCCGGTAATCTTAAACTTTTTAAGTCCCTCATTGCAATGATACGCGAATATATTTGTTAATACTAGACATGTGGTTATTTTCAGGATTTTAAACGTTTAAGGAGCTAATTCTAAGGAATTCTGTCTATTGTTTTGTCCAGGAAGACATGAAGAAGGTGATTAATTGTAAAGAAAACACATGAGACCCTAGAGAAATGAATTGTTCTGTTTCATTTCTTGATAAGCAGCCGCCCACTAAACCATTTAATCTAGCGTTCACAAATCTGAATTCATTCCGAGTTTCTCCGCTTAGACTTGACTGAAGATGGGTCTAGTTACAATTCTCGCTGGTGCAGGAGCAGTCGCAGTAGGCCTATTTGCAGCTGCTCCTGCAGCAGTATCAGCTATGGGTTTCACAGCAGGTGGAATATCTGCAGGTTCGTTTGCCTCCTGGATGATGTCAGTAACTGCCAAGGCAAATGGAGGAGGAGTCGCGGCTGGGTCGCTggtgtcattagcccctttcacacatacagacctttccggaaaattgccggcaattttccggaaaggttgtatgtgtgaacaggtcctttttgaaaataccggtaaattcgttctggctattttccggaaagagaagttgtaacattaccggcaatttgccggaatgctgcgctgtgtgaatgcagaaggaagattaccgtaataagcgcgtgcacgtctagaacgtgctgacgtgagacgtctgctttagccaatcacaacattcagacgcgtttacgtccgcgcggttcatgagaataaaagcctttgaatatttttccagacacatttagctgctagaagttagtcagatcacgtttatatgttcttcttaatgccaactgtataaataatcatcgatgagatgcttatgataagccgttgtttgtttaccttcaagctttgcgtgtgcctgtgaaaacagcctgtgagcgactgcacacgcacatattatgaatctcgacatgcgaaagtgatcctgcgaaagttgttcacaatattgatcatccacagagtttgtaatttatagtcaaatgtttacaaatacaagcgcagccgtttaaagctcatttgtggtgaatgatgtcagaatttaccggtatttttggaatggatgtgtgaatgctcttttccggaaaatttccgtaacgtcctcacctgtgtgaacagcgcttttttgaatataccggtaaagtcgttccagaaattttccagatatttaccggtatcactgtgtgaaaggggctattgctTCAAGCAATTGGTGCTGCTGGATTGTCTGCCGCAGCTAAAATTGTTTTTGGCGCCAAAGGGGCTCTGTAGTGCAGGTGCTGCAGGTGAAAAGCCGGCCTGAGAGACGGTTCATCTGTGCCTGACAAACCCTTCACTACATGATATTAACTTTTAGCTAATTTACGGCCATAAAAGTAGACACTACTAACTACTTTTAAATGTGATATTCTTAAATTCCTGTAGCTACTTTATTGTTTGCTGTTGTTATCAATTGTATGGtataacaaaacaatatattatcCAAAGTAAGATCAGATTAAATCTTGTTAAAATCTTAATTAAAAGGtttaaataaattgcattatAAATCATCAACGGTCTCTGTGTTGtattttcttaaataataataacaaaaataataaacagttctAGAAACAACAAGGTTGTGTTATGATTCTCAGAGAATGTTGAAAGTCATAAATTGTTATATTGTGAATGGAATGTTAAGTCCTTTTGGATGAACAATGCCGCTACTACATCAAAAGTGCTCATATAGCCTGGTTTACGAGCCCATGCAGTAGTAAAGTAATTGAATgttgtaaatatttgtaattcaaaatatgttaaacaataaaatgcaaacaatttTGCAAAATACACTAACTCACCTTcttccctgctttatcaggggtcgccacagtggaatgaaccgccaattactcaggcatatgttttacagagcagctGCCCTTTCATGCTATCccagtgttgaaaaaaaaaacatacattttccaATTCACACATTACAGCCAATTAAATTATCCAATTATTATATCaaacgtctttggactgtagaggaaactggagcacctgcaAGATCTGGTGCAGCTGGTATTTGAACCAGAGATAGCTCTATTAAGTGAGTCCTACatcgtgttgaaaaaaatctatgaTTTAGAATTAAAGTCCTGTTATAATTTGTCATTAGTTGCTGCAG

Function

GO:

id name namespace
GO:0042133 neurotransmitter metabolic process biological_process
GO:0046113 nucleobase catabolic process biological_process
GO:0099513 polymeric cytoskeletal fiber cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013144 lncRNA downstream 17647 37609804 ~ 37614979 (-) True XLOC_006833
TCONS_00013145 lncRNA downstream 19595 37609804 ~ 37613031 (-) False XLOC_006833
TCONS_00013142 lncRNA downstream 24254 37607057 ~ 37608372 (-) True XLOC_006832
TCONS_00013874 lncRNA downstream 96841 37528161 ~ 37535785 (-) True XLOC_006829
TCONS_00013135 lncRNA downstream 97202 37528161 ~ 37535424 (-) False XLOC_006829
TCONS_00013161 lncRNA upstream 553923 38190521 ~ 38195214 (-) True XLOC_006842
TCONS_00013877 lncRNA upstream 976627 38613225 ~ 38619719 (-) True XLOC_006843
TCONS_00013163 lncRNA upstream 1027232 38663830 ~ 38666293 (-) False XLOC_006844
TCONS_00013165 lncRNA upstream 1080577 38717175 ~ 38792001 (-) True XLOC_006844
TCONS_00013500 lncRNA upstream 1862994 39499592 ~ 39500307 (-) False XLOC_006850
TCONS_00013150 mRNA downstream 1534 37623276 ~ 37631092 (-) True XLOC_006835
TCONS_00013148 mRNA downstream 12336 37617520 ~ 37620290 (-) False XLOC_006834
TCONS_00013147 mRNA downstream 12432 37617520 ~ 37620194 (-) False XLOC_006834
TCONS_00013146 mRNA downstream 12535 37617518 ~ 37620091 (-) False XLOC_006834
TCONS_00013152 mRNA upstream 2160 37638758 ~ 37642890 (-) False XLOC_006837
TCONS_00013153 mRNA upstream 2166 37638764 ~ 37642893 (-) False XLOC_006837
TCONS_00013154 mRNA upstream 2172 37638770 ~ 37642901 (-) True XLOC_006837
TCONS_00013155 mRNA upstream 8974 37645572 ~ 37649595 (-) False XLOC_006838
TCONS_00013156 mRNA upstream 8985 37645583 ~ 37647209 (-) True XLOC_006838
TCONS_00013139 other downstream 32087 37594515 ~ 37600539 (-) False XLOC_006831
TCONS_00013140 other downstream 33381 37598711 ~ 37599245 (-) True XLOC_006831
TCONS_00013121 other downstream 453910 37178602 ~ 37178716 (-) True XLOC_006819
TCONS_00013107 other downstream 871310 36757555 ~ 36761316 (-) True XLOC_006809
TCONS_00013090 other downstream 1097554 36530420 ~ 36535072 (-) False XLOC_006800
TCONS_00013157 other upstream 14075 37650673 ~ 37656690 (-) False XLOC_006839
TCONS_00013167 other upstream 1216539 38853137 ~ 38853252 (-) True XLOC_006846
TCONS_00013170 other upstream 1605957 39242555 ~ 39242672 (-) True XLOC_006848
TCONS_00013199 other upstream 3593695 41230293 ~ 41230409 (-) True XLOC_006866
TCONS_00013200 other upstream 4026374 41662972 ~ 41663088 (-) True XLOC_006867

Expression Profile

//