XLOC_006844 (lmbrd1)


Basic Information

Item Value
gene id XLOC_006844
gene name lmbrd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 38621517 ~ 38792061 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013162
CCAGACCTGCGTGCCCGTGACGTTCCCTGTCACATGGCGCGTGCGTCAGCTGTGTTGCAGGAAGTGAAGCAGTCATGGCGACTCCTGTAGCGTTACTTTCTGAATCTGTGCTCGGATGGTCGATTTTCACTGTCGTTTTACTGGTCATCTTGGCCTTCTGCTGGGTTTATATTCGAAAGTATCAGAGTCGACAGGAGAGCGAGGTTATCTCTACTATCACGGCGATATGTGCTCTGGCTATTGCACTCATCACATCAGCTCTTCTTCCGGTGGATATCTTCCTAGTGTCCTTCATGAAGCACCCCAATGGCACTTACAAGgaatggGCAGCAAATAATGAAACCAGGGTGCAGATTGAAGACACAGTTTTGTATGGCTACTACACTCTGTACTCCATCATTCTGTTCTGCGTCTTCCTCTGGATCCCCTTTGTCTATTTCTACTACGAGGAGAAAGAtgaagacaacaacaacaagtgCTTGCAAGTGAAAAATGCACTGAAGTACACAATAGGATTTGTGATTGTGTGTTCCGCGCTGCTTTTGATTGGAACGTTTGTTCCTTTGGCATCTCCACCCAACCAGAACTCCACTCAATGGCAGAAGGTGCAGTATCTGTTTGAAGAGCTGGGCAGCAGCCATGGCCTGGCCGCCCTGTCGTTCTCCATCAGCTCGCTCACCTTGATTGGCATGCTGGCAGTGATCACATACACGGCATACGGGATGTCCGTGCTGCCGCTGAACCTGATTAAAGGCACACGCAGCGTCCTGTATGAGCGGCTGGAGAACACAGAAGACACGGAGGAGGTGGAGCACCAGATAGACAAGCTCAAAGCCAAGTGTGCTGATGGTCGTCCACTGTCTATGAGAGACCGGAGGAACCTCCAGGATCTTGAAGACAAGCTGCAGTTGCTGCATCGACGTGGACGTCACCTGGAGATCGCAGAGAGAAACTGCTGCAACAAAGTGGGCTCTGCTCTCCGTCCCATGAAGATCTTGCTCGGAGTCTTCTTCATCCTGGTGGCCCTTTTGTTCTTCGTGACCTTGTTTATTTCCAATCTGGATAAAGCTTTACATTCAGCTGGTATCAGCACTGGATTTATCATCTTTGGGACCAACTTAACCAACCCTCTTAATGAGCTGCTGCTGGCACTGCAACCGGTTTTCCCATTGGATTACGTTCTCATCACCGTCATCACAATGTACTTTGTCTTCACCTCAATGGCTGGGATCCGTAATATGGGGATTTGGTTCTTCTGGATAAGGCTGTATAAAATCAGGCCTCAGAGAACTCGACCACAGGCCCTGCTCTTTCTCTGCATGATCCTCCTCCTCATCGTCCTCCACACCAGCTACATGATCTACAGTCTGGCCCCGCAATACGTCATGTACGGCAGCCAGAAATACCTGCTGCAGacCCCGTTACCCACAGCAGTCCCTTCACAAAGCAATCGCTCTGCTACCATCACCAAGATATGTGATGCAGATGCTCCTGAAGACCAGTGCACGGTAACCAGATCATACCTGTTCCTGCACAAGTTTTGGTTTTTCAGCACCATCTACTATTTTGGCAACTGGGCTTTTCTTGGTGTGTTTCTCATCGGTTTGGTTGTGTCGTGCTGTAAAGGCAAGAAGTCTGTGATTGAAGGGGAAGTTGATGCAGACGATTCGGATTTCAGTGATGATGAATATGTCCATTAACCTCTGCTGTGGTATGAAATAAACACCTGATTTTACTAGGTCTGGTTAGCAGTTAGAGCTGGAGTATATCAATTGTAAAACAGTTTTTCACCTTCTCAAAACTCGTCCTTGATTCGTCGTTCAGagagagtattattattattaacattcttTAAGACTTAAGTGAATGTGTTATGATGCCAAATAGATTTTGTGTCTTTAGAGGCATtgttgtgtttaattagttagTAATCTGATATGTTAACCCGTTTCTAATACCAACTGAGGGTTTATATGCATGTCATGTTGCATTTTTGTCTGAAATAATTCAACACAAAAGACCAAATTTGTTTTCAGATAAGGTTTAAAGTTACAGATATTTTTGTTGACAGAAATAAAAAGGGTTGAGATCTTTATGCTGAATTATTTATTGAAGCTTTTTATAATTGCTGTGCACATCTGTCTTTTTGTTGTCTAGGAATAATACTGCTGTGTGCTTTCTTAAACGTTTCTGATCTCTGAATTATTATTGCCATAATGTCGAATTACTGTCACGCGTGTTGATTTCTTtcacagacttttattttggaatttTTGGATTGTACTTGCAATGATTGACTGATGCAAAATGATGTAAAATATACAGTGTTTGcttgtt
>TCONS_00013163
ATTGTCGTTTTTGTGAATGGCTGAAATAGACCGAGGCCTATTCAGTCCGTGAATATGTGGAGCTGCTGTGTCCAGAATTGGATTTTTTTCCTTGCCACATTTATCTCGTATATATTTTCCTCGTCTTTTTCTACAGGTTTTCCCATTGGATTACGTTCTCATCACCGTCATCACAATGTACTTTGTCTTCACCTCAATGGCTGGGATCCGTAATATGGGGATTTGGTTCTTCTGGATAAGGCTGTATAAAATCAGGCCTCAGAGAACTCGACCACAGGCCCTGCTCTTTCTCTGCATGATCCTCCTCCTCATCGTCCTCCACACCAGCTACATGATCTACAGTCTGGCCCCGC
>TCONS_00013164
TTCTGTTCTGCGTCTTCCTCTGGATCCCCTTTGTCTATTTCTACTACGAGGAGAAAGAtgaagacaacaacaacaagtgCTTGCAAGTGAAAAATGCACTGAAGTACACAATAGGATTTGTGATTGTGTGTTCCGCGCTGCTTTTGATTGGAACGTTTGTTCCTTTGGCATCTCCACCCAACCAGAACTCCACTCAATGGCAGAAGGTGCAGTATCTGTTTGAAGAGCTGGGCAGCAGCCATGGCCTGGCCGCCCTGTCGTTCTCCATCAGCTCGCTCACCTTGATTGGCATGCTGGCAGTGATCACATACACGTGTGCTGATGGTCGTCCACTGTCTATGAGAGACCGGAGGAACCTCCAGGATCTTGAAGACAAGCTGCAGTTGCTGCATCGACGTGGACGTCACCTGGAGATCGCAGAGAGAAACTGCTGCAACAAAGTGGGCTCTGCTCTCCGTCCCATGAAGATCTTGCTCGGAGTCTTCTTCATCCTGGTGGCCCTTTTGTTCTTCGTGACCTTGTTTATTTCCAATCTGGATAAAGCTTTACATTCAGCTGGTATCAGCACTGGATTTATCATCTTTGGGACCAACTTAACCAACCCTCTTAATGAGCTGCTGCTGGCACTGCAACCGGTTTTCCCATTGGATTACGTTCTCATCACCGTCATCACAATGTACTTTGTCTTCACCTCAATGGCTGGGATCCGTAATATGGGGATTTGGTTCTTCTGGATAAGG
>TCONS_00013165
GAAGTGAAGCAGTCATGGCGACTCCTGTAGCGTTACTTTCTGAATCTGTGCTCGGATGGTCGATTTTCACTGTCGTTTTACTGGTCATCTTGGCCTTCTGCTGGGTTTATATTCGAAAGTATCAGAGTCGACAGGAGAGCGAGGTTATCTCTACTATCACGGCGATATGTGCTCTGGCTATTGCACTCATCACATCAGCTCTTCTTCCGGTGGATATCTTCCTAGTGTCCTTCATGAAGCACCCCAATGGCACTTACAAGgaatggGCAGCAAATAATGAAACCAGGGTGCAGATTGAAGACACAGTTTTGTATGGCTACTACACTCTGTACTCCATCATTCTGTTCTGCGTCTTCCTCTGGATCCCCTTTGTCTATTTCTACTACGAGGAGAAAGAtgaagacaacaacaacaagtgCTTGCAAGTGAAAAATGCACTGAAGTACACAATAGGATTTGTGATTGTGTGTTCCGCGCTGCTTTTGATTGGAACGTTTGTTCCTTTGGCATCTCCACCCAACCAGAACTCCACTCAATGGCAGAAGGTGCAGTATCTGTTTGAAGAGCTGGGCAGCAGCCGTAAGTACCTTTAAGGCCTCTTTAAGTGAAATTGCAGCTCAGGTTTACTGACACTTGCAAAGAAAACGGCAAAAAGAGCTTTGTTGAAGCTTTCCAGGGCCACAACAGCAGAACGACAGGTGCTTTTAAGAGCGAGCGACGGATGCTGCCGAGGTGATGTGTGGGTTTGGCAGTGCTGACATTTAGCCTCGTCAATGTCAACAGACCTCATTGTGCCACCTAAATTTGCTGTctagaaaaaaaaggaaaggccCTGCTGCTTTTGACGTGTCAATCAGGACTTCCATTTGAGGCAGGAGTGGCAGGACCAGGTTTGCACCTGcgcaaaaagaaaa

Function

symbol description
lmbrd1 Predicted to enable cobalamin binding activity. Predicted to be involved in protein localization to lysosome. Predicted to act upstream of or within insulin receptor internalization. Predicted to be located in clathrin-coated endocytic vesicle; endoplasmic reticulum membrane; and plasma membrane. Predicted to be active in lysosomal membrane. Human ortholog(s) of this gene implicated in methylmalonic aciduria and homocystinuria type cblF. Orthologous to human LMBRD1 (LMBR1 domain containing 1).

GO:

id name namespace
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031419 cobalamin binding molecular_function

KEGG:

id description
ko04977 Vitamin digestion and absorption

ZFIN:

id description
ZDB-GENE-041212-36 Predicted to enable cobalamin binding activity. Predicted to be involved in protein localization to lysosome. Predicted to act upstream of or within insulin receptor internalization. Predicted to be located in clathrin-coated endocytic vesicle; endoplasmic reticulum membrane; and plasma membrane. Predicted to be active in lysosomal membrane. Human ortholog(s) of this gene implicated in methylmalonic aciduria and homocystinuria type cblF. Orthologous to human LMBRD1 (LMBR1 domain containing 1).

Ensembl:

ensembl_id ENSDARG00000104223

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013162 False 2337 mRNA 0.44 16 38621517 38792061
TCONS_00013163 False 353 lncRNA 0.46 2 38663830 38666293
TCONS_00013164 False 740 mRNA 0.49 8 38666053 38730267
TCONS_00013165 True 914 lncRNA 0.46 6 38717175 38792001

Neighbor

gene id symbol gene type direction distance location
XLOC_006843 NA coding downstream 1798 38613225 ~ 38619719 (-)
XLOC_006842 NA coding downstream 426303 38190521 ~ 38195214 (-)
XLOC_006841 CT027676.1 coding downstream 532890 38084077 ~ 38088627 (-)
XLOC_006840 eys coding downstream 581646 37992158 ~ 38039871 (-)
XLOC_006839 si:dkey-188i13.11 coding downstream 964827 37650673 ~ 37656690 (-)
XLOC_006845 BX323574.2 coding upstream 5984 38798045 ~ 38870801 (-)
XLOC_006846 BX323574.1 coding upstream 61076 38853137 ~ 38853252 (-)
XLOC_006847 col9a1b coding upstream 327399 39119460 ~ 39160018 (-)
XLOC_006848 BX324188.2 coding upstream 450494 39242555 ~ 39242672 (-)
XLOC_006849 slc35f3b coding upstream 554237 39346298 ~ 39399967 (-)
XLOC_006471 BX537274.2 misc downstream 28356612 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 37795292 825904 ~ 826225 (-)
XLOC_006836 NA non-coding downstream 984919 37632626 ~ 37636598 (-)
XLOC_006829 NA non-coding downstream 1085732 37528161 ~ 37535785 (-)
XLOC_006819 AL845493.1 non-coding downstream 1442801 37178602 ~ 37178716 (-)
XLOC_006850 NA non-coding upstream 707531 39499592 ~ 39504493 (-)
XLOC_006859 NA non-coding upstream 1626255 40418316 ~ 40419308 (-)
XLOC_006863 NA non-coding upstream 2169674 40961735 ~ 40977410 (-)

Expression


Co-expression Network