RNA id: TCONS_00013170


Basic Information

Item Value
RNA id TCONS_00013170
length 118
RNA type rRNA
GC content 0.51
exon number 1
gene id XLOC_006848
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 39242555 ~ 39242672 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATACGTGCCATCTTACCCTGCAGCTCAAGAGTGGTTACTCcctgaagttaagcagggctgagcctggtcagaacctggatgggagaccacatgagaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000115589

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013165 lncRNA downstream 450554 38717175 ~ 38792001 (-) True XLOC_006844
TCONS_00013163 lncRNA downstream 576262 38663830 ~ 38666293 (-) False XLOC_006844
TCONS_00013877 lncRNA downstream 622836 38613225 ~ 38619719 (-) True XLOC_006843
TCONS_00013161 lncRNA downstream 1047341 38190521 ~ 38195214 (-) True XLOC_006842
TCONS_00013875 lncRNA downstream 1605957 37632626 ~ 37636598 (-) False XLOC_006836
TCONS_00013500 lncRNA upstream 256920 39499592 ~ 39500307 (-) False XLOC_006850
TCONS_00013501 lncRNA upstream 256920 39499592 ~ 39504493 (-) True XLOC_006850
TCONS_00013186 lncRNA upstream 1050746 40293418 ~ 40293968 (-) True XLOC_006856
TCONS_00013878 lncRNA upstream 1175644 40418316 ~ 40419308 (-) True XLOC_006859
TCONS_00013502 lncRNA upstream 1719063 40961735 ~ 40977410 (-) False XLOC_006863
TCONS_00013169 mRNA downstream 82537 39120140 ~ 39160018 (-) True XLOC_006847
TCONS_00013168 mRNA downstream 82745 39119460 ~ 39159810 (-) False XLOC_006847
TCONS_00013166 mRNA downstream 371754 38798045 ~ 38870801 (-) True XLOC_006845
TCONS_00013162 mRNA downstream 450494 38621517 ~ 38792061 (-) False XLOC_006844
TCONS_00013164 mRNA downstream 512288 38666053 ~ 38730267 (-) False XLOC_006844
TCONS_00013171 mRNA upstream 103626 39346298 ~ 39399967 (-) False XLOC_006849
TCONS_00013172 mRNA upstream 103704 39346376 ~ 39399967 (-) True XLOC_006849
TCONS_00013173 mRNA upstream 413938 39656610 ~ 39830999 (-) False XLOC_006851
TCONS_00013174 mRNA upstream 460364 39703036 ~ 39736938 (-) False XLOC_006851
TCONS_00013175 mRNA upstream 486840 39729512 ~ 39830816 (-) True XLOC_006851
TCONS_00013167 other downstream 389303 38853137 ~ 38853252 (-) True XLOC_006846
TCONS_00013157 other downstream 1585865 37650673 ~ 37656690 (-) False XLOC_006839
TCONS_00013139 other downstream 1642016 37594515 ~ 37600539 (-) False XLOC_006831
TCONS_00013140 other downstream 1643310 37598711 ~ 37599245 (-) True XLOC_006831
TCONS_00013121 other downstream 2063839 37178602 ~ 37178716 (-) True XLOC_006819
TCONS_00013199 other upstream 1987621 41230293 ~ 41230409 (-) True XLOC_006866
TCONS_00013200 other upstream 2420300 41662972 ~ 41663088 (-) True XLOC_006867
TCONS_00013201 other upstream 2602281 41844953 ~ 41845067 (-) True XLOC_006868
TCONS_00013213 other upstream 3283649 42526321 ~ 42536960 (-) True XLOC_006880
TCONS_00013216 other upstream 3355088 42597760 ~ 42602408 (-) True XLOC_006883