RNA id: TCONS_00013081


Basic Information

Item Value
RNA id TCONS_00013081
length 993
RNA type nonsense_mediated_decay
GC content 0.51
exon number 6
gene id XLOC_006796
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36321088 ~ 36391502 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAACTACAAACCAAAGATCGACCAGCTGGAGGGGGACCATCAGCTAATACAGGAAGCACTTATATTTGACAATAAACACACTAACTACACCATGGagCACATCCGTGTGGGTTGGGAGCAGCTCCTCACCACCATCGCTCGCACCATTAATGAGATTGAAAACCAGATCCTGACACGTGACGCCAAAGGCATCAGCCAGGAGCAAATGAATGAGTTCAGAGCCTCGTTCAACCACTTCGACCGAAAGAGAACAGGCATGATGGATGCTGAAGACTTCAGAGCCTGCCTCATCTCCATGGGTTATAATATGGGAGAGGCGGAGTTTGCTCGCATCATGAGCATCGTGGATCCCAACAGACTGGGAGTCGTCACATTCCAGGCCTTCATTGACTTCATGTCCCGCGAAACGGCTGACACGGACACTGCAGATCAGGTCATGGCATCATTTAAAGTCCTCGCTGGAGACAAGAACTATATCCTGGCGGATGAGCTGAGGCGTGAGCTGCCCCCCGACCAGGCCGAATACTGCATCGCCCGCATGACGCCTTACAGCGGGCCTGATTCCGTCCCGGGAGCGCTCGACTACATGTCTTTCTCTACCGCCCTGTATGGGGAGAGCGACCTCTGAACCGTGACCTGCCTTCTCctacaaacacacagaaacgcatattcatacacacacacagctcgcACACtatgaagcagTAACAGTGGCTCTTAAACGCTGATCTGGAACCAACATGCAGAACTGGTCCcagatcagccaatcagagcagctTCCATCAGCTCCACCCAATGACGTtggctcgttttttttttttgtatcgtCCTTTCAGCCCTTCCTGTGTGTCATATACGACTTCCTGCTctttctctccagtgtgttcaTGAAGTCTGTCTTGCCTGCTTTAGGGATCGTGTCAGAAATGCTGCCTTCACATGCTCGTCTGGATATCACATTAGTGTATGTGACATTATGCAACAATCGGTT

Function

GO:

id name namespace
GO:0051764 actin crosslink formation biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0005509 calcium ion binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081113-4 Predicted to enable actin binding activity and calcium ion binding activity. Is expressed in several structures, including head muscle; intestine; nervous system; ovary; and ventral intermandibularis anterior. Human ortholog(s) of this gene implicated in platelet-type bleeding disorder 15. Orthologous to human ACTN1 (actinin alpha 1).

Ensembl:

ensembl_id ENSDART00000133858

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013872 lncRNA downstream 395947 35925042 ~ 35925484 (-) True XLOC_006784
TCONS_00013044 lncRNA downstream 794026 35520974 ~ 35527405 (-) True XLOC_006778
TCONS_00013869 lncRNA downstream 1031994 35205297 ~ 35289437 (-) False XLOC_006774
TCONS_00013088 lncRNA upstream 199331 36530230 ~ 36535072 (-) False XLOC_006800
TCONS_00013091 lncRNA upstream 200661 36531560 ~ 36532726 (-) False XLOC_006800
TCONS_00013096 lncRNA upstream 238048 36568947 ~ 36582281 (-) False XLOC_006803
TCONS_00013099 lncRNA upstream 256871 36587770 ~ 36612159 (-) True XLOC_006804
TCONS_00013101 lncRNA upstream 282263 36613162 ~ 36621925 (-) True XLOC_006805
TCONS_00013076 mRNA downstream 2123 36311894 ~ 36319308 (-) True XLOC_006795
TCONS_00013075 mRNA downstream 56570 36196778 ~ 36264861 (-) True XLOC_006794
TCONS_00013073 mRNA downstream 136730 36164639 ~ 36184701 (-) False XLOC_006793
TCONS_00013074 mRNA downstream 136955 36175772 ~ 36184476 (-) True XLOC_006793
TCONS_00013071 mRNA downstream 179945 36135122 ~ 36141486 (-) False XLOC_006792
TCONS_00013083 mRNA upstream 75375 36406274 ~ 36439061 (-) False XLOC_006798
TCONS_00013084 mRNA upstream 78414 36409313 ~ 36418921 (-) True XLOC_006798
TCONS_00013085 mRNA upstream 115288 36446187 ~ 36525982 (-) True XLOC_006799
TCONS_00013087 mRNA upstream 195907 36526806 ~ 36534380 (-) False XLOC_006800
TCONS_00013086 mRNA upstream 195907 36526806 ~ 36534380 (-) False XLOC_006800
TCONS_00013072 other downstream 180080 36135416 ~ 36141351 (-) True XLOC_006792
TCONS_00013058 other downstream 358965 35962350 ~ 35962466 (-) True XLOC_006785
TCONS_00013051 other downstream 478842 35826667 ~ 35842589 (-) True XLOC_006781
TCONS_00013045 other downstream 729054 35592242 ~ 35592377 (-) True XLOC_006779
TCONS_00013041 other downstream 861500 35430544 ~ 35459931 (-) True XLOC_006776
TCONS_00013082 other upstream 68361 36399260 ~ 36399375 (-) True XLOC_006797
TCONS_00013090 other upstream 199521 36530420 ~ 36535072 (-) False XLOC_006800
TCONS_00013107 other upstream 426656 36757555 ~ 36761316 (-) True XLOC_006809
TCONS_00013121 other upstream 847703 37178602 ~ 37178716 (-) True XLOC_006819
TCONS_00013139 other upstream 1263616 37594515 ~ 37600539 (-) False XLOC_006831

Expression Profile

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