RNA id: TCONS_00013872


Basic Information

Item Value
RNA id TCONS_00013872
length 443
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id XLOC_006784
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 35925042 ~ 35925484 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGTCACGCATCATACGATGTTGTGCACACGCAGGCAAACGCTGAGGTGAGCCTTTACACGTTTATGAGGATTGTATAGTGTAGGCTACTGTAAACCATAAATTTGAAAAACTGCTTAAAATGTCTACTTTTGAAATGCTAATTGAATTATCCGTcattttaatttgtcatttaacaGCACATTAGTTTGTAGAGtcatttttgtgtttaattttgcaGATTTCCAGCTAATAATGGTTCTGTGACACGTTAAAATCAACATCACATCACTGTGAAAATACGAAAAAAGTAATGACAACAAACATATTTGTTactttaactgttttatttaatcaATGAATCAGCTAAATTCTTaataaattcatacatttaattcattcattcgttttctttttggcttagtccctttattaatcagggtttaccacagcggaatgaacct

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013044 lncRNA downstream 397637 35520974 ~ 35527405 (-) True XLOC_006778
TCONS_00013869 lncRNA downstream 635605 35205297 ~ 35289437 (-) False XLOC_006774
TCONS_00013868 lncRNA downstream 635667 35205297 ~ 35289375 (-) False XLOC_006774
TCONS_00013871 lncRNA downstream 635815 35277858 ~ 35289227 (-) True XLOC_006774
TCONS_00013870 lncRNA downstream 635932 35248697 ~ 35289110 (-) False XLOC_006774
TCONS_00013080 lncRNA upstream 395880 36321364 ~ 36322604 (-) False XLOC_006796
TCONS_00013088 lncRNA upstream 604746 36530230 ~ 36535072 (-) False XLOC_006800
TCONS_00013091 lncRNA upstream 606076 36531560 ~ 36532726 (-) False XLOC_006800
TCONS_00013096 lncRNA upstream 643463 36568947 ~ 36582281 (-) False XLOC_006803
TCONS_00013099 lncRNA upstream 662286 36587770 ~ 36612159 (-) True XLOC_006804
TCONS_00013056 mRNA downstream 16767 35904335 ~ 35908275 (-) False XLOC_006783
TCONS_00013057 mRNA downstream 17274 35906948 ~ 35907768 (-) True XLOC_006783
TCONS_00013053 mRNA downstream 32737 35880664 ~ 35892305 (-) False XLOC_006782
TCONS_00013052 mRNA downstream 32799 35880573 ~ 35892243 (-) False XLOC_006782
TCONS_00013054 mRNA downstream 32799 35889149 ~ 35892243 (-) False XLOC_006782
TCONS_00013059 mRNA upstream 48878 35974362 ~ 35976986 (-) True XLOC_006786
TCONS_00013060 mRNA upstream 58513 35983997 ~ 35984530 (-) True XLOC_006787
TCONS_00013061 mRNA upstream 59137 35984621 ~ 35985772 (-) True XLOC_006788
TCONS_00013062 mRNA upstream 69754 35995238 ~ 36034582 (-) True XLOC_006789
TCONS_00013063 mRNA upstream 112486 36037970 ~ 36049008 (-) False XLOC_006790
TCONS_00013051 other downstream 82453 35826667 ~ 35842589 (-) True XLOC_006781
TCONS_00013045 other downstream 332665 35592242 ~ 35592377 (-) True XLOC_006779
TCONS_00013041 other downstream 465111 35430544 ~ 35459931 (-) True XLOC_006776
TCONS_00013038 other downstream 554358 35370569 ~ 35370684 (-) True XLOC_006775
TCONS_00013037 other downstream 703429 35206835 ~ 35221613 (-) False XLOC_006774
TCONS_00013058 other upstream 36866 35962350 ~ 35962466 (-) True XLOC_006785
TCONS_00013072 other upstream 209932 36135416 ~ 36141351 (-) True XLOC_006792
TCONS_00013079 other upstream 395607 36321091 ~ 36391491 (-) False XLOC_006796
TCONS_00013081 other upstream 395947 36321431 ~ 36330899 (-) True XLOC_006796
TCONS_00013082 other upstream 473776 36399260 ~ 36399375 (-) True XLOC_006797

Expression Profile

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