RNA id: TCONS_00013072


Basic Information

Item Value
RNA id TCONS_00013072
length 859
RNA type nonsense_mediated_decay
GC content 0.49
exon number 8
gene id XLOC_006792
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36135122 ~ 36141486 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAGATCTCTTTCCGCATCAAATCGCATAgctttatatgtaataaatatataaaaggatATAAAAAGATAATCTGCTGGGCATCTCATGGGTGGACAGCGGCTGGGTGCCTATCCTGAACCCCAGCAATGTCTTGGAGTATTTCTCCGAGAGGAGCAATCCCTTCTATGATCGCACCTGCAACAACGAGGTGGTCAAAATGCAGAGATCAACCCTGGATCACCTCACTCAGCTGGTGGGTGTGGAATATATTTTGCTTCACACTCAGGAGCCTATTCTGTACATCATCCGAAAGCAGCAGAGACAATCACCAACACAAGTGATCCCTCTTGCTGACTACTATATCATAGCTGGCGTGGTGTATCAGGCTCCTGACCTGGGATCTGTAATCAGTTCCAGAGCGCTTTCAGCGGTTCACGGGATTCAGTCTGCGTTTGATGAAGCCATGTCCTTCTGCAGATACCACCCGTCCAAAGGGTACTGGTGGCATTTTAAAGACCAGGAAGAGAAAGAAAGAGTAAAGCCGAAATCGAAGCGGAAAGAGGAGCCGAGCTCTTTGTTCCAGAGGCAGAGAGTCGACACGCTGTTACTGGACCTGCGCAATAAATTTCCCCCAACCTTCTATCAGACCAAGCCAGGAGAGAAGCCTGTTCCAGTGGAGGTTAAAAAAGAGCCAGAAGTGCCTGTTGAGACGGTGAAGCCTCAAGAAGAGCGAGAGACGAAACCTCCAGCTCCTCCTGCACCTCCACGGCCTCCACCACAAACTACACCCAACAAACCTCCACCTGAGAAGCGTGCTCGTGTACAGTAACAAACACCTGCAGCCACAAAACATCAATGCTAAGGGACTGACTGATGT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0070847 core mediator complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0003712 transcription coregulator activity molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-040625-61 Predicted to enable transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Orthologous to human MED6 (mediator complex subunit 6).

Ensembl:

ensembl_id ENSDART00000133072

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013872 lncRNA downstream 209932 35925042 ~ 35925484 (-) True XLOC_006784
TCONS_00013044 lncRNA downstream 608011 35520974 ~ 35527405 (-) True XLOC_006778
TCONS_00013869 lncRNA downstream 845979 35205297 ~ 35289437 (-) False XLOC_006774
TCONS_00013080 lncRNA upstream 180013 36321364 ~ 36322604 (-) False XLOC_006796
TCONS_00013088 lncRNA upstream 388879 36530230 ~ 36535072 (-) False XLOC_006800
TCONS_00013091 lncRNA upstream 390209 36531560 ~ 36532726 (-) False XLOC_006800
TCONS_00013096 lncRNA upstream 427596 36568947 ~ 36582281 (-) False XLOC_006803
TCONS_00013099 lncRNA upstream 446419 36587770 ~ 36612159 (-) True XLOC_006804
TCONS_00013066 mRNA downstream 1015 36053985 ~ 36134401 (-) False XLOC_006791
TCONS_00013070 mRNA downstream 1099 36054929 ~ 36134317 (-) False XLOC_006791
TCONS_00013069 mRNA downstream 1099 36054929 ~ 36134317 (-) False XLOC_006791
TCONS_00013068 mRNA downstream 1099 36054929 ~ 36134317 (-) False XLOC_006791
TCONS_00013067 mRNA downstream 1099 36054929 ~ 36134317 (-) True XLOC_006791
TCONS_00013073 mRNA upstream 23288 36164639 ~ 36184701 (-) False XLOC_006793
TCONS_00013074 mRNA upstream 34421 36175772 ~ 36184476 (-) True XLOC_006793
TCONS_00013075 mRNA upstream 55427 36196778 ~ 36264861 (-) True XLOC_006794
TCONS_00013076 mRNA upstream 170543 36311894 ~ 36319308 (-) True XLOC_006795
TCONS_00013077 mRNA upstream 179737 36321088 ~ 36391496 (-) False XLOC_006796
TCONS_00013058 other downstream 172950 35962350 ~ 35962466 (-) True XLOC_006785
TCONS_00013051 other downstream 292827 35826667 ~ 35842589 (-) True XLOC_006781
TCONS_00013045 other downstream 543039 35592242 ~ 35592377 (-) True XLOC_006779
TCONS_00013041 other downstream 675485 35430544 ~ 35459931 (-) True XLOC_006776
TCONS_00013038 other downstream 764732 35370569 ~ 35370684 (-) True XLOC_006775
TCONS_00013079 other upstream 179740 36321091 ~ 36391491 (-) False XLOC_006796
TCONS_00013081 other upstream 180080 36321431 ~ 36330899 (-) True XLOC_006796
TCONS_00013082 other upstream 257909 36399260 ~ 36399375 (-) True XLOC_006797
TCONS_00013090 other upstream 389069 36530420 ~ 36535072 (-) False XLOC_006800
TCONS_00013107 other upstream 616204 36757555 ~ 36761316 (-) True XLOC_006809

Expression Profile

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