XLOC_006794 (slc8a3)


Basic Information

Item Value
gene id XLOC_006794
gene name slc8a3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36196778 ~ 36264861 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013075
ATGGATCGCTCAAGGACAAAGACTTCTGCCTACCTCTGGTTAGGCGTAGTCTCCGTGGCAACAGCCTTTCTCTGTGCAGAGGCACGAGTCACACCAAGCCCGCCTCTCACAAACAACACCACATGTGTCGGGGAAACGGATCGATGCAAGCCTGGCATCATCTTACCCATCTGGTACCCTGAGGACCCTTCAATGGGCGACAAGATCGCCAGGGTCATAGTGTACTTCGTGGCAATGATCTACATGTTCCTGGGGGTGTCGATTATTGCGGATCGCTTCATGGCTGCTATTGAAGTCATCACTTCCCAGGAGAAGGAAATCATCAttaagaggccgaatggagaGACGACGACAACGACAATCCGAGTGTGGAACGAGACCGTGTCCAATCTAACGCTCATGGCGCTGGGCTCCTCGGCCCCTGAGATCCTTCTCTCTCTCATTGAGATTTGCGGGCACGAGTTCCACGCTGGCGAACTCGGACCATCCACCATTGTGGGCAGCGCTGCATTCAACATGTTTGTGATCATAGGCCTGTGCGTGTCTGTGATCCCAGAAGGGGAGGTCCGAAAGGTGAAACACCTTCGTGTGTTTTTTGTAACGGCCGCATGGAGCGTGTTTGCCTACATCTGGCTCTACATGATCTTGGCCGTGTTCTCACCCAACGTAGTCCAAGTTTGGGAAGGTCTTCTCACCTTGGCGTTCTTCCCCATTTGTGTGATCCTGGCGTGGGTAGCCGACCGCCGGCTTCTCTTCTATAAATTCATGCACAAGAAATATCGTACAGACAAACACAGAGGTGTCATTATCGAGACGGAGGGGGATCGCACGAAAGGCATTGAAATGGACGGGAAGATGATGAATTCTCATTTTATCGACGGCGGAGCTGCTAGTAACTTAATGGGCCTGATTGAGGGCAAGGAGGTAGACGAGTCTCGCAGAGATATGATCCGCATCCTAAAGGACCTGAAGCAGAAACACCCAGAGAAGGAGCTGGACCAGCTGGTGGAGATGGCCAACTACTATGCACTGTCACACCAACAGAAGAGCAGAGCGTTTTATCGAATCCAGGCCACGAGGATGATGACGGGTGCTGGAAACATTCTCAAGAAGCATGTTGCCGAACAGGCCAAACGCAGCGCAAGCGTTCAAGAAGTTCACGTAGAAGAGCCTGAAGAGTTTGTGTCCCGTATTATGTTCGAACCGGCTATTTATCAATGTCTGGAGAACTGCGGTGCCGTTCTGCTCACAGCTGTACGCAAAGGAGGGGACATTACTAAGACAATCTATGTGGATTATAAAACAGAAGATGGCTCTGCGAATGCTGGTGCGGACTATGAGTTCACAGAAGGAACTGTGGTGTTCAAACCTGGCGAGGTCATCAAGGAGATCACCGTCGGCATCATCGATGACGACATCTTTGAGGAGGATGAGCATTTCTTTGTGCGTCTCAGTAACGTTCGTGTTCTTGAGACTGAGGATGAGGTGCTGTCGCCCAGTAGCCTGCCCTACCCCAAGGCCTTGATAGGGTTTCCTGCTGTTGCCACGGTTACCATCCTCGACGATGACCATGCAGGCATCTTCACATTTGAAAGCGATTCCATGCACGTGAGTGAGAGTGTGGGCATCATGGAGGTGAAAGTGCTGCGGACATCAGGAGCAAGAGGGACAGTCATCATTCCTTTCCGCACAATGGAGGGACTCGCTAAGGGTGGCGGAGAGGACTTTGAGGATGCTTATGGAGAGCTGGAGTTCAAAAACGACGAGACCTGtAAAACCATACAGGTGAAGATTATTGATGATGAGgagtatgaaaaaaacaaaaacttctaCCTGGAGCTTGCAGAACCACGCATGGTGGACATGAGTCTTCAGAAagATATTCAGGACAGGAAGTTGTCATCAGAGGAAGAGGAAGCAAGAAGAATAGCAGAGATGGGAAAGCCTATATTGGGCGAGCATTCAAAAATAGAGATCATCATCGAGGAGTCGTATGAGTTTAAGAGTACTGTAGATAAGCTGATTAAAAAGACTAACTTGGCTTTGGTCGTGGGCACAAATTCCTGGAGAGAGCAATTCATGGAGGCCATAACTGTCAGTGCAGGAGATGAGGACGAGGATGAGGGTGCAGAGGAGCGTCTGCCATCTTGTTTTGACTATGTCATGCACTTCCTGACGGTGTTCTGGAAGGTTCTGTTTGCCTGTGTTCCGCCCACAGAATACTGGAACGGATGGGCCTGCTTCATcgtctccatcatcatcatcggTCTTCTGACTGCTGTGATTGGTGACCTGGCCAGTCACTTCGGCTGCACTATCGGCCTCAAGGACTCTGTCACTGCTGTGGTGTTTGTAGCTCTGGGAACATCCATTCCTGACACCTTTGCTAGTAAAGTGGCGGCGGTGCAGGACAGTTACGCAGACGCGTCCATCGGTAACGTGACCGGAAGCAACGCCGTGAACGTTTTCCTGGGAATCGGCGTGGCCTGGTCAGTGGCTGCCATCTACTGGCACATGCAGGGTCGTGCGTTCGAGGTGCCTGCAGGTTCCCTTGCATTTTCTGTCACTCTCTTCACCATCTTTGCCTTTCTGGCAGTGGGTGTCCTGCTGTACCGGCGCAGGCCTCACATCGGTGGTGAGCTGGGCGGCCCACGGGGACACCGCATCCTCACCACACTCTTCTTCTTCAGTCTTTGGTTTCTCTACATTCTCTTCTCCAGTCTGGAAGCTTACTGTCATATACAGGGCTTCTGAAAGGGGCGGGATGGGGAGGGAGACCAGGACTACATCAGAAAGATTTCAAGATCAGAGCTGTGAACAGGACATTCGTTCTTCAGATACATTCGTGCTGAAGATGAAGGACGAGTGGGACAGTCTTAACCTGGAGTCTGAGCTTTTCACAGTCTATATTTTTCTCAACACCTGCTGAGAACGACTTTTTTCTAAATGAAGTATTTTgg

Function

symbol description
slc8a3 Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in anterograde synaptic vesicle transport and vesicle-mediated transport. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane. Is expressed in brain; eye; ovary; and somite. Orthologous to human SLC8A3 (solute carrier family 8 member A3).

GO:

id name namespace
GO:0048490 anterograde synaptic vesicle transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0007154 cell communication biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005432 calcium molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050810-1 Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in anterograde synaptic vesicle transport and vesicle-mediated transport. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane. Is expressed in brain; eye; ovary; and somite. Orthologous to human SLC8A3 (solute carrier family 8 member A3).

Ensembl:

ensembl_id ENSDARG00000004931

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013075 True 2960 mRNA 0.51 6 36196778 36264861

Neighbor

gene id symbol gene type direction distance location
XLOC_006793 map3k9 coding downstream 12077 36164639 ~ 36184701 (-)
XLOC_006792 med6 coding downstream 55292 36135122 ~ 36141486 (-)
XLOC_006791 pcnx1 coding downstream 62377 36053985 ~ 36134401 (-)
XLOC_006790 lgmn coding downstream 146451 36037970 ~ 36050327 (-)
XLOC_006789 si:dkey-157l19.2 coding downstream 162196 35995238 ~ 36034582 (-)
XLOC_006795 cox16 coding upstream 47033 36311894 ~ 36319308 (-)
XLOC_006796 actn1 coding upstream 56227 36321088 ~ 36391502 (-)
XLOC_006797 CR361558.1 coding upstream 134399 36399260 ~ 36399375 (-)
XLOC_006798 dcaf5 coding upstream 141413 36406274 ~ 36439061 (-)
XLOC_006799 pacs2 coding upstream 181326 36446187 ~ 36525982 (-)
XLOC_006471 BX537274.2 misc downstream 25931873 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 35370553 825904 ~ 826225 (-)
XLOC_006785 BX510990.1 non-coding downstream 234312 35962350 ~ 35962466 (-)
XLOC_006784 NA non-coding downstream 271294 35925042 ~ 35925484 (-)
XLOC_006779 BX663524.1 non-coding downstream 604401 35592242 ~ 35592377 (-)
XLOC_006775 CU138575.1 non-coding downstream 826094 35370569 ~ 35370684 (-)
XLOC_006774 NA non-coding downstream 907341 35205297 ~ 35289437 (-)
XLOC_006804 BX927407.1 non-coding upstream 322909 36587770 ~ 36612159 (-)
XLOC_006814 NA non-coding upstream 730772 36995633 ~ 36997760 (-)
XLOC_006815 NA non-coding upstream 744951 37009812 ~ 37012236 (-)
XLOC_006817 NA non-coding upstream 845351 37110212 ~ 37110536 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_05344320_05385222 SLC8A3 coding CI01000012 null 5344320 ~ 5385557 (+)
bowfin (Amia calva) G45792 slc8a2,LOC103358178,LOC107739881 unknown CM030125.1 CM030125.1 38043736 ~ 38043968 (-)