CI01000012_05344320_05385222 (SLC8A3)


Basic Information

Item Value
gene id CI01000012_05344320_05385222
gene name SLC8A3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5344320 ~ 5385557 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_05344320_05385222.mRNA
ATGGATCGCTTAAGGACAAAGACTTCTGCCTACCTCTGGTTAGGTGTGGTCTGCGTGGCAACAACCTTTCTCTGCGCAGAGGCGCGAGTCACGCCAAGCCCGCCCCTCCCGAACAACACCGCATGCTTCGAGGAGACGGGTCGATGCCAACCTGGCATCATCTTACCCATCTGGTACCCCGAGGACCCTTCCATGGGTGATAAGATCGCGAGAGTCATTGTGTACTTCGTGGCAATGATCTACATGTTCCTGGGGGTGTCGATTATTGCAGATCGCTTCATGGCCGCCATTGAGGTCATCACCTCCCAAGAAAAGGAAATCATCATCAAGCGTCCAAATGGTGAGACGACAACCACGACAATCCGTGTGTGGAACGAGACCGTGTCCAACCTCACGCTCATGGCGTTGGGCTCCTCCGCCCCTGAGATCATGCTTTCCGTCATCGAGATTTGCGGACACGAGTTCCATGCCGGTGAACTCGGCCCATCCACCATTGTAGGCAGCGCCGCCTTCAACATGTTTGTGATCATCGGCCTGTGCGTGTCAGTGATCCCGGAGGGGGAGGTCCGGAAGGTGAAACACCTGCGTGTGTTTTTCGTGACGGCAGCATGGAGCGTGTTTGCCTACATCTGGCTCTATATGATCCTGGCTGTGTTCTCGCCCAACGTAGTCCAAGTATGGGAAGGGCTTCTCACCTTGGCGTTCTTCCCCATCTGTGTCGTTCTGGCTTGGGTTGCCGACCGTCGCCTGCTCTTCTACAAGTTCATGCACAAGAAATATCGCACGGACAAGCACAGAGGTGTCATTATCGAGACGGAGGGTGACCGCTCCAAAGGTATCGAAATGGACGGAAAGATGATGAATTCTCATTTTGTCGATGGCGGAGCTGCTAGTAACTTGATGGGCCTGATTGAGGGCAAGGAGGTAGACGAGTCTCGCAGAGATATGATCCGTATCCTAAAGGACCTGAAGCAGAAACACCCAGAGAAGGAGCTGGACCAGCTAGTGGAGATGGCCAACTATTATGCACTGTCACACCAACAGAAAAGCAGAGCGTTTTATCGTATCCAGGCCACGAGGATGATGACTGGTGCCGGAAACATACTCAAGAAGCATGTGGCTGAGCAGGCCAAACGCAGCACTAGTGTTCAAGAAGTTCACGTAGAAGAACCTGAGGAGTTTGTGTCCCGTATTATGTTCGAACCTGCCATTTACCAGTGTCTGGAGAACTGCGGGGCTGTTCTGCTCACGATAGTGCGTAAAGGTGGCGACATTGCTAATACAATCTATGTGGATTATAAAACGGAAGACGGCTCTGCGAACGCCGGTGCGGACTATGAGTTCACGGAGGGCACAGTGGTGTTCAAACCTGGTGAAGTTGTCAAGGAAATCACTGTTGGCATCATCGATGACGACATCTTTGAGGAGGACGAGCATTTCTTCGTGCGGCTCAGTAATGTGCGTGTTCTGGAGACCGAGGATGAGGTGCTGTCGCCCAGTAGCCTGCCGTACCCAAAAGCCTTGTTAGGATTCCCTGCCGTTGCTACAGTTACCATCCTCGATGATGACCATGCAGGCATCTTCACTTTTGAAAGCGAGTCCATGCACGTGAGTGAGAGTGTGGGCATCATGGAAGTGAAAGTGCTGAGGACGTCAGGAGCAAGAGGGACAGTCATCATTCCTTTCCGCACAATGGAGGGACTTGCTAAGGGTGGCGGAGAGGACTTTGAGGACGCCTACGGTGAGCTAGAGTTCAAAAACGACGAGACCTGTAAAACCATACAGGTTAAGATCATCGATGATGAGGAGTATGAAAAAAACAAAAACTTCTACCTGGAGCTAGCTGAACCACGCATGGTGGACATGAGCCTCCAGAAAGCTCTGTTATTAGCTGATGATGTTCCAGACAGGAAGTTGTCATCAGAGGAAGAGGAAGCGAGAAGAATAGCAGAGATGGGGAAGCCTGTATTGGGCGAGCATGCAAAAATAGAGATTATCATTGAGGAGTCGTATGAGTTTAAGAGTACAGTAGATAAGCTGATTAAGAAGACTAACCTCGCTCTGGTCGTGGGCACAAATTCCTGGAGAGAACAATTCATGGAGGCCATAACTGTCAGTGCAGTGATCATCGGTCTTTTGACTGCTGTGATTGGTGACCTGGCCAGTCACTTTGGCTGCACCATTGGCCTGAAGGACTCAGTCACCGCTGTGGTGTTTGTAGCCCTGGGAACATCCGTCCCTGATACCTTTGCCAGTAAAGTGTCAGCGGTGCAGGACAGTTACGCAGACGCGTCTATCGGTAACGTGACCGGTAGCAACGCCGTGAACGTTTTCCTGGGAATCGGTTTGGCGTGGTCAGTGGCCGCCATCTACTGGCACATGCAGGGTCGTGCGTTCGAGGTGCCAGCAGGTTCCCTGGCATTTTCTGTCACTCTCTTCACCATCTTTGCCTTCCTGGCGGTGGGCGTCCTGCTGTACCGGCGCAGGCCTCACATCGGTGGAGAGCTGGGCGGCCCGCGCAGACAGCGCATCTTCACAACACTCTTTTTCTTCAGTCTCTGGTTTCTCTACATCCTTTTCTCCAGTCTTGAGGCTTACTGTCATATACAAGGCTTCTGAAGAGAAGAGATAGGGGTGGGGTGGGGGTCGGAAGATGAGGAGAGATAGATGCGAGGAAACTTCTGCTAGGAGGAAATGACAGAGTAAGAGCTAAGGATTGATTTGAAAAGGTCACTAAGGTTTTAAGCAGGCGTGGATTTGAAGAGGACATTCATTCTTCAGATAACTTTGTGCTGAAGATGAAGAGTATGAAGCATCTCTCTTATAAAGGGTGGGACAGTCTTAACCTGGAGTCTGAGCTTTTCACAGTCTATATTTTTCTCAACACCTGCTGAGAACGACTTTTTTCTAATGAAGTATTTTGGGAAAAAAAGACAAAAATATAACAAAAAGAA

Function

symbol description
slc8a3 Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in anterograde synaptic vesicle transport and vesicle-mediated transport. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane. Is expressed in brain; eye; ovary; and somite. Orthologous to human SLC8A3 (solute carrier family 8 member A3).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K05849 SLC8A, NCX; solute carrier family 8 (sodium/calcium exchanger)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_05344320_05385222.mRNA True 2954 mRNA 0.51 7 5344320 5385557

Neighbor

gene id symbol gene type direction distance location
CI01000012_05262254_05301347 ACTN1 coding upstream 42219 5262196 ~ 5302101 (+)
CI01000012_05233556_05252071 DCAF5 coding upstream 91811 5233225 ~ 5252509 (+)
CI01000012_05198747_05229460 PACS2 coding upstream 114642 5198172 ~ 5229678 (+)
CI01000012_05184593_05185298 NA coding upstream 158839 5184593 ~ 5185481 (+)
CI01000012_05177587_05180517 SRSF5A coding upstream 163436 5176895 ~ 5180970 (+)
CI01000012_05390382_05407802 MAP3K9 coding downstream 4457 5390014 ~ 5408144 (+)
CI01000012_05419501_05424708 MED6 coding downstream 33944 5419501 ~ 5424826 (+)
CI01000012_05425849_05469157 PCNX, PCNX1 coding downstream 40292 5425849 ~ 5469157 (+)
CI01000012_05495596_05510317 NA coding downstream 109800 5495357 ~ 5510972 (+)
CI01000012_05523886_05527548 NA coding downstream 138329 5523886 ~ 5528161 (+)
G71171 NA non-coding upstream 38747 5304404 ~ 5305573 (+)
G71529 NA non-coding upstream 181887 5161509 ~ 5162433 (+)
G71172 NA non-coding upstream 204352 5137470 ~ 5139968 (+)
G71523 NA non-coding upstream 310053 5034028 ~ 5034267 (+)
G71518 NA non-coding upstream 396032 4948035 ~ 4948288 (+)
G71225 NA non-coding downstream 23665 5409222 ~ 5411516 (+)
G71548 NA non-coding downstream 164936 5550493 ~ 5561433 (+)
G71559 NA non-coding downstream 187260 5572817 ~ 5573228 (+)
G71562 NA non-coding downstream 223293 5608850 ~ 5611605 (+)
G71599 NA non-coding downstream 251811 5637368 ~ 5637671 (+)
CI01000012_04495631_04501066 NA other upstream 844231 4495631 ~ 4501066 (+)
CI01000012_04424569_04425090 NA other upstream 918673 4424569 ~ 4425756 (+)
G70029 NA other upstream 2712935 2622478 ~ 2631385 (+)
G71199 NA other downstream 27693 5413250 ~ 5416785 (+)
G71218 NA other downstream 150295 5535852 ~ 5538384 (+)
G71221 NA other downstream 152968 5538525 ~ 5540456 (+)
G71623 NA other downstream 427960 5813517 ~ 5816605 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006794 slc8a3 coding NC_007124.7 CM002897.2 36196778 ~ 36264861 (-)