G71225


Basic Information

Item Value
gene id G71225
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5409222 ~ 5411516 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU81205
ACTTGAGGGTGAGTAAATTATCAGGAAATTTTAATTCTGAAGTGAACTAATCCTTTAAATCTGAAAATTGGTCAAAACTAAGCGACTAGTTGAAAGGGTTTATTTTTCTTACCCTGTTGGCAGAATGTTTTTTCTTGTTTTAAGTGTAAAGTCACTTAATTTTGATATATTTTTTTCAGGAAAACAAAACTTGTTATCTCATGTCATTTTGCTTCTCAAATAATTGTATCTTGATTTAGAAATGCTTAAATATTTATACAAGAAAACAAGACAAAAATTCAGATGCAGTGTGGAGTCCAATAGTGTGTCTTGATAAGCTAATCTTCAGTATACACTTCTATTCATCACCAGGCGTAATAAGCTATCGAATAATAATACAATCCAGATGCTTCATTAATGGCCAGACTGATTTCTGAGTGCTTTAGAAAAGTACAGGGTCTGTAGCTGTGATCTTTAGAGACATTTATCAGGACAATTTTTTTATTTGCAAACTTGTTTTTTATTCATATTGAGTGTATTATCTCAGCTGTCCTGCTGCGCTGTATTGACTTCCTCTCTGTATGTACACACGTCTGCATGTTTATGGTAGATTTAGCTTTCTGAACATGGTAGCCTACTGGGTTAGATGGAGAACATTGGACAGTTTATTTCTACAACTCTGTGGAGTTTTCAGGTTTTATTTGTCATACATGAATGAGATTGTACACCTTTAGAAGTGCTTTTTCCGGTCTCATGAATGTATAGTTCTTCTGTTATACTTCCATTCGAGATCACTGATTGTTCTGTGGTTTTCACTGTAGCATGAAACACATTGTCTTTCACAAATAATATGCTTGTTTAGTGACATCTTCACCATCCAAACTACCAGAATTAAACATGAGGGAACGTCTTTAAGAGGAAAGTTAGAATTTTTTGGCTTTAAGTTTGCAGCTATACAATAGTCAGGTACATTACTGCAGTTTTCCGGTGTTTGTGCATGTGCAGTATGTGTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGATTCAGTGTAACTGATGGGTTCCAAAGTGAATGTGCATTGAATTTTGTTGGAGATTTTTGAGAATGTTGAGTTTGTTTTGCAGGTTTTTTAGTAGCATTTTGTGCAATATTTTTTATGTTTACACATATTTATTTCTTTAAATTATTTTTATATTTTTCACATTTTTATTATTTTGTGATGAAATTTATTAGGAGCAACATTCCTGTCTGGATTTTTGGACATGTTCAGACAAGAAGAGGTGAACATTTTTTTGCACATGTTTACAGCATCGTTATCCTCTGTCTCTCATTCCAATCTTTCATCTCTATACCGGCAAAAACTTCCTCTAGAGACAAAACAACATTTAGAGCCAAAACACAGAAGGGCTTATGTCTCTCTTCCCCTTTCTGTCACTTGAAACCAGATTTTGAACTTTTGTCATGCATACAACAAAATGAACTAGCAGTGTAAAATTCAGAGTCCTAAAATTTGGCAAGTTGGCTGAGGAGGAACTCTCACTTCATTCCATCAGGATGTGGAATAGGGGTGTATTTTTTCTGGCTTAAAGGAATGTGTAGCTATCATCAAGAGCATCTGCTGCCATTTATCAGCACAATAACTGTTGTCCTGGAGAGCAGGTGTTTTGGGTTCAGAAGCTGCTGCTATGAAACTTGTACTTGCACCCGAGCACATTAGACTTGTGTAAGAGCTCGATTAAAGCCCTGAAATGCTGAGATGTGGTGTTTTGTGACTGACTGTCTTAGTATAGAATACAAAACTCAAGAAAATGATTTGCACATTTTATTATCATCATCATAACTGCAAATAAATGAGACTAGACTGGCATTTTCCAAATTAATTCTCTCTTTCACTTAACATAAACATTAAGGCAAGACATAAACCATTGTTGTTGTTGTTTTTTCATGAACTGGTCAATTTTGAGATGTTGGGCTATTTTGATTATAGCAAGCATGTCTCTTTTTAGACTAGTGGAAAGAAAACATCCAAAATACACATTTAAGTCTTATTTATTACACTTTATCTATTTGCATCTATAGATTTCAATAACAATACATATTTTAAAGGCTGTTTTCTCAAAACACTTTCCCCCAAACCTTTTCAGTTTTATTCCTAGGCTATCTATATTCTGAAGGGGTTTGTTCATAAATAATTTACCTGATATGTAAAATTTTATTCTTAAGAAGATTATTTTTTTTCTGGCTGTTGACAGCATTTTATGGAGTGATAAAAACAGATATCCAAAATCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU81205 True 2270 lncRNA 0.34 2 5409222 5411516

Neighbor

gene id symbol gene type direction distance location
CI01000012_05390382_05407802 MAP3K9 coding upstream 1078 5390014 ~ 5408144 (+)
CI01000012_05344320_05385222 SLC8A3 coding upstream 23665 5344320 ~ 5385557 (+)
CI01000012_05262254_05301347 ACTN1 coding upstream 107121 5262196 ~ 5302101 (+)
CI01000012_05233556_05252071 DCAF5 coding upstream 156713 5233225 ~ 5252509 (+)
CI01000012_05198747_05229460 PACS2 coding upstream 179544 5198172 ~ 5229678 (+)
CI01000012_05419501_05424708 MED6 coding downstream 7985 5419501 ~ 5424826 (+)
CI01000012_05425849_05469157 PCNX, PCNX1 coding downstream 14333 5425849 ~ 5469157 (+)
CI01000012_05495596_05510317 NA coding downstream 83841 5495357 ~ 5510972 (+)
CI01000012_05523886_05527548 NA coding downstream 112370 5523886 ~ 5528161 (+)
CI01000012_05551775_05553851 NA coding downstream 140167 5551683 ~ 5554363 (+)
G71171 NA non-coding upstream 103649 5304404 ~ 5305573 (+)
G71529 NA non-coding upstream 246789 5161509 ~ 5162433 (+)
G71172 NA non-coding upstream 269254 5137470 ~ 5139968 (+)
G71523 NA non-coding upstream 374955 5034028 ~ 5034267 (+)
G71518 NA non-coding upstream 460934 4948035 ~ 4948288 (+)
G71548 NA non-coding downstream 138977 5550493 ~ 5561433 (+)
G71559 NA non-coding downstream 161301 5572817 ~ 5573228 (+)
G71562 NA non-coding downstream 197334 5608850 ~ 5611605 (+)
G71599 NA non-coding downstream 225852 5637368 ~ 5637671 (+)
G71606 NA non-coding downstream 260238 5671754 ~ 5672210 (+)
CI01000012_05177587_05180517 SRSF5A other upstream 228252 5176895 ~ 5180970 (+)
CI01000012_04495631_04501066 NA other upstream 909133 4495631 ~ 4501066 (+)
CI01000012_04424569_04425090 NA other upstream 983575 4424569 ~ 4425756 (+)
G70029 NA other upstream 2777837 2622478 ~ 2631385 (+)
G71199 NA other downstream 1734 5413250 ~ 5416785 (+)
G71218 NA other downstream 124336 5535852 ~ 5538384 (+)
G71221 NA other downstream 127009 5538525 ~ 5540456 (+)
G71623 NA other downstream 402001 5813517 ~ 5816605 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033842 fshb coding NC_007118.7 CM002891.2 32605705 ~ 32612560 (+)