CI01000012_04495631_04501066


Basic Information

Item Value
gene id CI01000012_04495631_04501066
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4495631 ~ 4501066 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_04495631_04501066.mRNA
ATGATGGCAGCTGGTGCAGGAGCAGCCGTAGCAGTTGTTGCAGCTCCTGCTGTTCTAGCAGCGGCCGGTTTCACCGCAGGTGGAATTGCTGCAGGTTCAATTGCCTCCACTTTGATGTCAGCTGCCGCCGTGGCTAACGGAGGAGGGGTCGCAGCTGGAGGCTTGGTAGCAACTCTTCAAGTCGCCGGTGCAGCTGGAATCCCTATCGTAGCTAATGCTGTAATAGGTGCCATAGGGGCCACTGTGGGTGGAGCTATTGGTGGAACATTGATATGCAGTGCAGGAGCCGCAGGTGCTGCAACAATCCCTGCCGCAGGCGAAGGCATTGTAGCCGCCGGGAGGATGGAACATTTCAGGGAACCTGTAAAAACAGACTGCGAGGAACTACTGGCTCGTTTTCAGGCGACCGAGTCAGTTCGGTACGAGCAGTTTCTAGAGATCTGGAGAGACATGAACTTCAGTAGCATCTTCTATGGTAAACCAGAACCATCTGAGAGAAGGCGCTTTGCTCGTCTGATCCTGTCTGTGGTGTCTCCATACTTCTTTCCTCCCTACACTTTCCAGATTAGAGTGGGGGGGCTTTATCTGCTGCACGGGCTCTTCAACTCACAACTCGTCACTCCCAGAGAGAAGATCCGCATTTCTCTGAAGGACTGGGAGGATGTCATGCAGTTTCAGAGGGATGCAGTGAATGCTCAACATTATGATGTGGTTTATATCTTCAGAAAGCTCCTGTCAGATAAAGCTTTCTACTTCACGGCCATGCCAATACCAGAAATTGCAAATATCCACGAGCATTATGAGGGTCTAAAGAAAGCTATTTTCGCTGAGCCAGACCCAAACCTGGATCTTATCCAAAAAAACCTGGTTCCCAAACTAAACGGTGCCATCCTCACCTATTCCAGTTGGCAGTGGAACCGTACG
>TU81162
CTAAACGAGAAACTCAAGAAATGAGAGACATGAAAACATGAAACGCTTTTAACGCTTTTTATATGATTTTAAAACATGTAAACAGTTGAGTCTGTGTGGTCTTGACTAAAGGGGAGGATGGAACATTTCAGGGAACCTGTAAAAACAGACTGCGAGGAACTACTGGCTCGTTTTCAGGCGACCGAGTCAGTTCGGTACGAGCAGTTTCTAGAGATCTGGAGAGACATGAACTTCAGTAGCATCTTCTATGGTAAACCAGAACCATCTGAGAGAAGGCGCTTTGCTCGTCTGATCCTGTCTGTGGTGTCTCCATACTTCTTTCCTCCCTACACTTTCCAGATTAGAGTGGGGGGGCTTTATCTGCTGCACGGGCTCTTCAACTCACAACTCGTCACTCCCAGAGAGAAGATCCGCATTTCTCTGAAGGACTGGGAGGATGTCATGCAGTTTCAGAGGGATGCAGTGAATGCTCAACATTATGATGTGGTTTATATCTTCAGAAAGCTCCTGTCAGATAAAGCTTTCTACTTCACGGCCATGCCAATACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_04495631_04501066.mRNA False 924 mRNA 0.51 8 4495631 4501066
TU81162 True 549 TUCP 0.45 3 4498453 4500089

Neighbor

gene id symbol gene type direction distance location
CI01000012_04488201_04489863 NA coding upstream 5734 4488201 ~ 4489897 (+)
CI01000012_04436374_04437448 NA coding upstream 58032 4435280 ~ 4437599 (+)
CI01000012_04424569_04425090 NA coding upstream 69875 4424569 ~ 4425756 (+)
CI01000012_04386557_04402516 NA coding upstream 92656 4386203 ~ 4402975 (+)
CI01000012_04371425_04373907 NA coding upstream 121640 4371425 ~ 4373991 (+)
CI01000012_04514814_04539220 SYT16 coding downstream 13748 4514814 ~ 4539599 (+)
CI01000012_04551570_04571150 SGPP1 coding downstream 50504 4551169 ~ 4571339 (+)
CI01000012_04578508_04582452 WDR89 coding downstream 75929 4576995 ~ 4582610 (+)
CI01000012_04595199_04620295 PPP2R5EB, 2A5E, PPP2R5E1, PPP2R5E coding downstream 92801 4593867 ~ 4620453 (+)
CI01000012_04647182_04692241 KCNH5, KCNH5B coding downstream 146116 4647182 ~ 4692476 (+)
G71375 NA non-coding upstream 148251 4346804 ~ 4347380 (+)
G71305 NA non-coding upstream 256225 4239125 ~ 4239406 (+)
G71158 NA non-coding upstream 385355 4109941 ~ 4110276 (+)
G71156 NA non-coding upstream 388509 4106835 ~ 4107122 (+)
G71152 NA non-coding upstream 407389 4087869 ~ 4088242 (+)
G71239 NA non-coding downstream 28290 4529356 ~ 4585221 (+)
G71442 NA non-coding downstream 140471 4641537 ~ 4641848 (+)
G71208 NA non-coding downstream 205490 4706556 ~ 4710923 (+)
G71478 NA non-coding downstream 289590 4790656 ~ 4790866 (+)
G70029 NA other upstream 1864246 2622478 ~ 2631385 (+)
G68725 NA other upstream 3810775 683523 ~ 684856 (+)
G68660 NA other upstream 3959678 535566 ~ 535953 (+)
CI01000012_05177587_05180517 SRSF5A other downstream 675829 5176895 ~ 5180970 (+)
G71199 NA other downstream 912184 5413250 ~ 5416785 (+)
G71218 NA other downstream 1034786 5535852 ~ 5538384 (+)
G71221 NA other downstream 1037459 5538525 ~ 5540456 (+)
G71548 NA other downstream 1049427 5550493 ~ 5561433 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location