CI01000012_05262254_05301347 (ACTN1)


Basic Information

Item Value
gene id CI01000012_05262254_05301347
gene name ACTN1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5262196 ~ 5302101 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_05262254_05301347.mRNA
TTATAAAAAATGTCTCGGATGTGATTTTCTGCACAGAAGTCTAAAAACTATTTGAAATATGAGTGAAACATTTGTCGCTCCCACACTCTTTTCTTCCCCTTTGGAAAACGGGGAGGAAAAAAGAACGAGTGCTGGAATCTGCTGCGGTTTGGGCTGGGCTTGTCATGGAGCGAGTCTGCCCAAAAATGGTAATAACAGACCCCGTACACGGCTGCTGGAAAACTTTCCCGGGTTACTTTTTTTTCCTTCCTCGAAAGCTTGTAGACTCCTGAATGATGTCATCAGCTACCGGCGGGAAAGACTCATGCTCAGTTTTTTTGTCTTCCACGTTTTTGATACGCATTACAGTGGCTGGAATATTGTAACAGCTCTTGCGTGTTCTTATCCATGGGGATCGGCTGTATCCCATCATACGTTTACTGCATGGTGCAATTCTCATCTACGGAAGGCGGGGACGCAGATCGAAAACATTGAGGAGGATTTTAGAGACGGACTCAAACTCATGCTGCTCCTAGAGGTCATCTCAGGAGAACGCTTGGCCAAACCAGAGAGAGGAAAAATGAGAGTCCATAAGATCTCCAATGTGAACAAAGCTCTGGACTTCATCGCCAGCAAAGGAGTCAAACTGGTTTCTATTGGAGCAGAGGAGATTGTTGATGGAAATGCTAAGATGACTCTGGGGATGATCTGGACCATTATCCTCCGCTTCGCCATCCAGGACATCTCAAGGAAAACAGCTCCCTACAAAAATGTCAACATTCAGAATTTCCACATCAGTTGGAAGGATGGATTGGGCTTCTGTGCACTCATTCACAGACATCGTCCAGAGCTCATTGATTACGGTAAACTGCGCAAGGACGACCCAATGACTAATCTGAACACCGCCTTTGATGTCGCTGAGAAGTACCTGGACATCCCTAAGATGCTGGATGCAGAAGATATTGTTGGTACGGCCCGTCCCGATGAGAAGGCCATCATGACCTACGTTTCTAGCTTCTACCATGCCTTCTCTGGGGCGCAGAAGAAACAGAAGCAGATTCACTGTCCTTTACCCCCTCAGGCCGAGACAGCAGCCAATCGGATCTGCAAAGTGCTGGCTGTCAATCAGGAGAACGAGCAACTGATGGAAGACTATGAGAAACTAGCCAGTGATCTGTTGGAGTGGATTCGCAGAACCATCCCGTGGTTGGAGAACCGTGTTCCGGAGAACACCATGCAGGCAATGCAGCAGAAGTTGGAGGATTTCCGGGACTACCGACGACTTCACAAACCACCTAAAGTTCAGGAGAAATGTCAGCTGGAGATCAACTTCAACACACTGCAGACCAAACTCCGCCTCAGTAACCGGCCTGCGTTCATGCCCTCAGAGGGGAAGATGGTCTCGGATATCTCCAATGCTTGGGGAGGGCTTGAGGGAGCAGAGAAGGGTTATGAAGAGTGGCTACTGAATGAGATTCGCAGACTGGAGAGACTCGACCATCTTGCAGAGAAATTCCGCCAAAAAGCCGCCATCCATGAAGCCTGGACTGATGGTAAGGAGGAGATGTTGCAGGAGAAAGACTACGAGACGGCATCCCTCTCAGAGATCAAAGCTCTGCTGAAGAAGCACGAGGCATTTGAGAGTGACCTCGCAGCTCATCAGGACAGGGTGGAACAGATCGCTGCCATCGCACAGGAGCTTAATGAGTTGGAGTACTACGACTCTCCAAGTGTAAACGCTCGCTGTCAGCGGATCTGTGATCAGTGGGATTCACTGGGAGTTTTAACTCAGAAACGCAGCGAGGCCTTGCAGAGGACCGAGAAACTGTTGGAAACTATTGATCAGCTGTACCTGGAGTTCGCCAAAAGGGCGGCACCCTTTAACAACTGGATGGAGGGAGCCATGGAGGACCTGCAGGACACTTTCATCGTCCACACTATTGAGGAGATACAGGGACTCAGCACAGCCCATGAGCAGTTTAAAGCCACACTGCCTGAGGCAGATAAGGAACGACAGGCCATCCTGGGCATCCATAATGAAATTGCTAAAATTGTGCAGACATACCACGTCAACATGGCTGGCACCAACCCCTACACCACCATCAACCCCCAGGAGATCAATGCCAAATGGGATAAGGTGAGGCAGTTAGTACCCCAGAGAGATCAGGCCCTGATCGAAGAACACGCTCGTCAGCAGAATAACGAGAGGCTGCGCAGACAGTTTGCTAATCAGGCAAATGTTATTGGGCCCTGGATCCAGACCAAGATGGAGGAAATTGGCCGAATCTCTATTGAGATGCACGGTACCCTGGAGGATCAGCTGACCCACCTGCGACAGTATGAGAAGAGCATCGTAAACTACAAACCAAAGATCGACCAGCTAGAGGGAGACCATCAACTAATACAGGAAGCACTTATATTTGACAACAAACACACTAACTACACAATGGAGCACATTCGTGTAGGTTGGGAGCAGCTCCTCACTACCATCGCTCGCACCATTAACGAGATCGAGAACCAGATTCTGACCCGTGACGCCAAAGGCATCAGCCAGGACCAAATGAATGAGTTCAGAGCCTCGTTCAACCACTTCGACCGAGTCAGTATTACACTTCACAGTCCAACACCACAGTTTAACATCAATCAGAGCACACAGTACTGCACAGTTTGTCCTAACGTTTGTGCACTTTTCTCTTCTTTTGTCTTCTCGTTTTTCTCTTCTGCATGGACCCTCTTCCACCCCTCCACATGTCTGCATGACATTCCCCCACCCCTCCCATGTGTGTGCTGCATGTCCACGCTGCTGACCTCTGACCCTGCCCACGGCTCTGACACCCAGGACCACTCGGGCACACTGGGCGCTGAGGAGTTCAAAGCCTGCCTTATCAGTCTGGGCTTCGATATCGGGAACGACGCACAGAAGAGAACAGGCATGATGGATGCAGAAGACTTCAGAGCCTGCCTCATCTCCATGGGTTATAATATGGTAAAGCAGAGAGTTCAAATCTCCATGGGTTGTGATCAGGGAGAGGCGGAGTTTTCCCGCATCATGAGCATTGTGGATCCTAACAGACTGGGACTGGTCACATTCCAGGCCTTCATTGACTTTATGTCTCGCGAGACGGCCGACACAGACACCGCTGATCAGGTCATGGCGTCGTTTAAAGTCCTTGCTGGAGACAAGAACTATATCCTGGCGGATGAACTGAGGCGTGAGCTCCCCCCTGACCAGGCCGAGTACTGCATCGCCCGCATGACGCCTTACACCGGCCCTGACGCCGTCCCGGGAGCTCTTGACTACATGTCCTTCTCCACCGCCCTCTATGGGGAGAGTGACCTCTGAACCGTGACCCCTGGATGTGGGGTCAACCTGCCTTCTGATACAAACACACACAAATACGCATATTCATACACACATATACATAGCTCGCACTCTATGAGAGTAAAAGTGGCTCTTCAGCGCTGATCTAGCACCAACAACCAGAGCAAGCAGACCTGGTCCCAGATCAGCCAATCAGAGCAGCTTCCATCAGCACCACACAATAATGTTCAGTCATTTTTGTATCCTCCTATCAGCCCAGGCCTTTCTGTGTGTACGACTTCCTGCTCTTTTTGCAGCCGTGTTCATGAAGTCTGTCTTGCCTGTCTTGGGAACTGTGTCACAAAGACGAAGCTTAATGCTGCCTTCACATGCTTGTCAGAAGATCCTACTTCCCCGTGAAGTCGTAATTGAGTATGTCGCACTGAAGGAGAGAAAAGGAAACAAGACGTGAATGCCTAATACTGTTTTTCTCTGTGCAAACATACAATATGCAACAAACGGTTACAAATATACACAGTAGCACGTGGTAGGCAGCATCATGTTATCGTTGTGACCTGTGAACCATGTGATACATCATGACCATGTGTTACGATTGATACACTTTTTTTACATGAGGTAAATGCTTGATCGTTCTCTTGTGACGGTGAGTCAGATTTCATGAACAGATCTTCCCCTTTCTGCTTCCAAGCGCAACATTGAAAAACTCTCCCTCCCCCAGAGGAATGTTTTCTGTATTTTTACTTCTTATTTTGTGTTTTTTCCTCTTCATAAAGGA

Function

symbol description
actn1 Predicted to enable actin binding activity and calcium ion binding activity. Is expressed in several structures, including head muscle; intestine; nervous system; ovary; and ventral intermandibularis anterior. Human ortholog(s) of this gene implicated in platelet-type bleeding disorder 15. Orthologous to human ACTN1 (actinin alpha 1).

GO:

id name namespace
GO:0017166 vinculin binding molecular_function

KEGG:

id description
K05699 ACTN1_4; actinin alpha 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_05262254_05301347.mRNA True 4076 mRNA 0.49 23 5262196 5302101

Neighbor

gene id symbol gene type direction distance location
CI01000012_05233556_05252071 DCAF5 coding upstream 9687 5233225 ~ 5252509 (+)
CI01000012_05198747_05229460 PACS2 coding upstream 32518 5198172 ~ 5229678 (+)
CI01000012_05184593_05185298 NA coding upstream 76715 5184593 ~ 5185481 (+)
CI01000012_05177587_05180517 SRSF5A coding upstream 81312 5176895 ~ 5180970 (+)
CI01000012_05168339_05174369 SYNJ2BP, DESI2 coding upstream 87354 5168160 ~ 5174842 (+)
CI01000012_05344320_05385222 SLC8A3 coding downstream 42219 5344320 ~ 5385557 (+)
CI01000012_05390382_05407802 MAP3K9 coding downstream 87913 5390014 ~ 5408144 (+)
CI01000012_05419501_05424708 MED6 coding downstream 117400 5419501 ~ 5424826 (+)
CI01000012_05425849_05469157 PCNX, PCNX1 coding downstream 123748 5425849 ~ 5469157 (+)
CI01000012_05495596_05510317 NA coding downstream 193256 5495357 ~ 5510972 (+)
G71529 NA non-coding upstream 99763 5161509 ~ 5162433 (+)
G71172 NA non-coding upstream 122228 5137470 ~ 5139968 (+)
G71523 NA non-coding upstream 227929 5034028 ~ 5034267 (+)
G71518 NA non-coding upstream 313908 4948035 ~ 4948288 (+)
G71513 NA non-coding upstream 331861 4927694 ~ 4930335 (+)
G71171 NA non-coding downstream 2303 5304404 ~ 5305573 (+)
G71225 NA non-coding downstream 107121 5409222 ~ 5411516 (+)
G71548 NA non-coding downstream 248392 5550493 ~ 5561433 (+)
G71559 NA non-coding downstream 270716 5572817 ~ 5573228 (+)
G71562 NA non-coding downstream 306749 5608850 ~ 5611605 (+)
CI01000012_04495631_04501066 NA other upstream 762107 4495631 ~ 4501066 (+)
CI01000012_04424569_04425090 NA other upstream 836549 4424569 ~ 4425756 (+)
G70029 NA other upstream 2630811 2622478 ~ 2631385 (+)
G71199 NA other downstream 111149 5413250 ~ 5416785 (+)
G71218 NA other downstream 233751 5535852 ~ 5538384 (+)
G71221 NA other downstream 236424 5538525 ~ 5540456 (+)
G71623 NA other downstream 511416 5813517 ~ 5816605 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000163 actn1,LOC107705429,LOC107602958,LOC107739883 coding CM030141.1 CM030141.1 5714870 ~ 5742038 (-)