CI01000012_05168339_05174369 (SYNJ2BP, DESI2)


Basic Information

Item Value
gene id CI01000012_05168339_05174369
gene name SYNJ2BP, DESI2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5168160 ~ 5174842 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_05168339_05174369.mRNA
GGATAAAATGACAAGAGTGGATCATTTATATAGTGTTTTGGTCTTTTGGATGTTGGTGTAGCGACTTTGCTGTGTGTTTTAATCTTCTTTGGATCCGAAACCCGGGTGCGCGAGGGGGCAGCTATCTCGAGAGCAATAAACGCCCGTTATTTTAAGGGACCGAGCGCTTCTCTCTCAGGATGGCAAATGAACCCGTTATTCTTAATGTGTATGACATGTACTGGATAAATGAATACACCTCTACTCTGGGTATTGGAGTCTTCCACTCAGGAATAGAGATCTACGGCAGAGAGTTTGCATATGGCGGCCATCCATATCCCTTCAGTGGCATTTTTGAGATCAGCCCCGGAAATGCCTCAGAACTGGGGGAGACTTTCAAATTCAAAGAGGCTATAGCTCTGGGTACGACAGACTTTGCAGAGGAGGACATTGATAAAATAATGGAGGAGCTAGGAAAGGAGTTCAAGGGGAACGCCTACCACCTGATGCACAAAAACTGCAACCATTTTTCTTCCTCGCTGTCTGAGTTGCTGTGTGGTAAAGAGATCCCACGCTGGGTGAATCGATTGGCATATTTCAGCTCCTGCATTCCATTTCTGCAGAGTTGTCTGCCTAAAGAGTGGCTCACGCCCGCCGCACTCCAGACCCATATCTGCATGGGCCTTCGGAAGGAGAACACACACTCACACACACACGACTCCAGCGACGATGAGCCCTCATCTGCCCCAGAGGCAGCAGCTGGAACCTCGCACAGCTGCAGACACACTCGCGTGTGATCTCACATACACAGTATTACACTAAATTGAACACACATATACACTTCAACCTCTGATCCTGCTGCTACAGCGCCTCCTGTTGGGCTGGATGAACACCAGACCTCATGGCCTCTCTGAAAGGGGAAATCAAAGTCATGTTTTTCTGTAGAGTCCACAGGGATTTAAAAACATTGCAATGGTACTCTTAAAGTTTTAGAATTGTTTGATTTTTGCTAAGATTTTAGGGAAATCAAAACAGTGTTTGCCATGTAGTGTTCTTTCTCTTATAAGTAGGACAATATGAATGATGGGTGAACACGATGGACTGTACCCTGCTGGTGTGTGAAAGCACTACAGGCCCCGCCCTCAAAAATACTGAACTTTCAGTAGTCAATTCATTTCTGTCTGTCGCTTTGACTTTTAAACTCATCTGGGTATTCTCTGGATTTAGCCGAGTTTGCTGTGTATTTAATTCTTTTCTATTTTGTGATAGA

Function

symbol description
synj2bp Predicted to be involved in several processes, including establishment or maintenance of epithelial cell apical/basal polarity; receptor clustering; and receptor localization to synapse. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including basolateral plasma membrane; neuromuscular junction; and postsynaptic density membrane. Orthologous to human SYNJ2BP (synaptojanin 2 binding protein).
desi2 Predicted to enable deubiquitinase activity. Acts upstream of or within convergent extension involved in gastrulation. Predicted to be located in cytoplasm. Is expressed in several structures, including margin; nervous system; neural plate; neural tube; and trunk. Orthologous to human DESI2 (desumoylating isopeptidase 2).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20057 SYNJ2BP, OMP25; synaptojanin-2-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_05168339_05174369.mRNA True 1249 mRNA 0.45 5 5168160 5174842

Neighbor

gene id symbol gene type direction distance location
CI01000012_05159183_05163128 SYNJ2BP coding upstream 4354 5158964 ~ 5163806 (+)
CI01000012_05143891_05154080 NA coding upstream 13981 5143299 ~ 5154179 (+)
CI01000012_05124400_05129545 NA coding upstream 38414 5124160 ~ 5129746 (+)
CI01000012_05094462_05108315 SOS2 coding upstream 58469 5094462 ~ 5109691 (+)
CI01000012_05085822_05090635 L2HGDH coding upstream 77250 5085103 ~ 5090910 (+)
CI01000012_05177587_05180517 SRSF5A coding downstream 2054 5176895 ~ 5180970 (+)
CI01000012_05184593_05185298 NA coding downstream 9751 5184593 ~ 5185481 (+)
CI01000012_05198747_05229460 PACS2 coding downstream 23330 5198172 ~ 5229678 (+)
CI01000012_05233556_05252071 DCAF5 coding downstream 58383 5233225 ~ 5252509 (+)
CI01000012_05262254_05301347 ACTN1 coding downstream 87354 5262196 ~ 5302101 (+)
G71529 NA non-coding upstream 5727 5161509 ~ 5162433 (+)
G71172 NA non-coding upstream 28192 5137470 ~ 5139968 (+)
G71523 NA non-coding upstream 133893 5034028 ~ 5034267 (+)
G71518 NA non-coding upstream 219872 4948035 ~ 4948288 (+)
G71513 NA non-coding upstream 237825 4927694 ~ 4930335 (+)
G71171 NA non-coding downstream 129562 5304404 ~ 5305573 (+)
G71225 NA non-coding downstream 234380 5409222 ~ 5411516 (+)
G71548 NA non-coding downstream 375651 5550493 ~ 5561433 (+)
G71559 NA non-coding downstream 397975 5572817 ~ 5573228 (+)
G71562 NA non-coding downstream 434008 5608850 ~ 5611605 (+)
CI01000012_04495631_04501066 NA other upstream 668071 4495631 ~ 4501066 (+)
CI01000012_04424569_04425090 NA other upstream 742513 4424569 ~ 4425756 (+)
G70029 NA other upstream 2536775 2622478 ~ 2631385 (+)
G68725 NA other upstream 4483304 683523 ~ 684856 (+)
G71199 NA other downstream 238408 5413250 ~ 5416785 (+)
G71218 NA other downstream 361010 5535852 ~ 5538384 (+)
G71221 NA other downstream 363683 5538525 ~ 5540456 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006801 FP103009.1 coding NC_007124.7 CM002897.2 36537426 ~ 36545258 (-)