CI01000012_05159183_05163128 (SYNJ2BP)


Basic Information

Item Value
gene id CI01000012_05159183_05163128
gene name SYNJ2BP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5158964 ~ 5163806 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_05159183_05163128.mRNA
CTATATGATGCAATATGGCGAACTGTTTGCAAGAACCGACTCTCGAAGATGAGTCAGACGTCCCATCACAGCAGTGCACTTTGTTCCGGTGGTGCCCGTTAGGGGGCAGTGACGGGTACGCTGGTGTCCCGGCAGCATTAGAAGAAGCAGGCGGAGTTCCGCACGCTTTAGAAGGATTTTAGCTGTTTCGGAAATAAAAAGTAGAACTTTTCCGACATCATGAACGGATCCGCATACAACGCGTCGAGCGTTACTGATATTACACTGAAAAGAGGCCCGGCTGGTCTGGGGTTTAATATAGTGGGTGGAGTGGACCAGCAGTATATAATGAATGACAGTGGAATCTATGTGGCAAAAATCAAAGAAAACGGAGCGGCTGCGCTGGACGGACGTCTACAGGAGGGAGACAAAATTATTGCGATAAATGGCCAAAAGTTGGAGAATCTGTCTCACGGTGCAGCAGTGGAGCTCTTTCGGTCTGCAGGAGAGGATGTGCATCTTCGCATACAGCAGCGACCTATTCTGCAGAACGGCCCCACAAGCTCTCGTGCTGATGGAGAATCTTCATCTGCTTTCGGTACATGGACATTGTATGCTGTAGTCGGCCTGGCAGTAGTAACAGCAGGTTTCATCGCTTACAAACGGCTTCATCTGAACCCTCGGGGGGCCCGGGGCCCGTTTTAACCCATCACATTTTATAGACTAAAGCTTTTTTTTTTTTTTTTGAACTCCCCCAGACCCAGTTCATGGAAGCAGAATGTGCAAATTTTCTTTAATTGTTTATAACATGATATTATGACACATGTAGCTGTAAAATTTTCACAATTCATTTGGTGATAATCATTGGAGTTTAACCAAGAATACCCAGCATGCCTGATGACATCGCATGGTGGAATAAGGGAACAGGGATGATGAGCACAGTGTTTGGATCAACAGCAGCAGAAATCTGTTATCCGAACTAGACAGAGGGCCGCAGACAGAGGCTGAGGTGGAGCTGTGTTTCTGGGCAGAAGACAGACCCACAGAGGAATGATTTTTCTCGTCGTGTACCTCCAGAGTGCTGGAATGAGCCCGAGGTTGTACCATCCATTAGGTTATTTGAGGTCTTCTCAGGTACCTGCTTGTGCAAGAGTATGTTTGAAAGCATGCATGATGTGGGTTGAGTTTTTTTATTTTTATTAATACTTCAATTTCTCATCCGTGTTTGAACATGCAGGATGCATTTCTGTGGCTGCAGTAGTGCTGGGGGAAGTGAAGACGTTCAGTTTGTTTATTTGCCATCAGCACTTGGCCTTGTATTTGCTCTTCCTCCCTCAGGGGAAAAAAAACTAAAGGTGGCACTTGTTAGAATTCACAATCAGA

Function

symbol description
synj2bp Predicted to be involved in several processes, including establishment or maintenance of epithelial cell apical/basal polarity; receptor clustering; and receptor localization to synapse. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including basolateral plasma membrane; neuromuscular junction; and postsynaptic density membrane. Orthologous to human SYNJ2BP (synaptojanin 2 binding protein).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20057 SYNJ2BP, OMP25; synaptojanin-2-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_05159183_05163128.mRNA True 1362 mRNA 0.46 4 5158964 5163806

Neighbor

gene id symbol gene type direction distance location
CI01000012_05143891_05154080 NA coding upstream 4785 5143299 ~ 5154179 (+)
CI01000012_05124400_05129545 NA coding upstream 29218 5124160 ~ 5129746 (+)
CI01000012_05094462_05108315 SOS2 coding upstream 49273 5094462 ~ 5109691 (+)
CI01000012_05085822_05090635 L2HGDH coding upstream 68054 5085103 ~ 5090910 (+)
CI01000012_05067336_05074406 CDKL1 coding upstream 84425 5066928 ~ 5074539 (+)
CI01000012_05168339_05174369 SYNJ2BP, DESI2 coding downstream 4354 5168160 ~ 5174842 (+)
CI01000012_05177587_05180517 SRSF5A coding downstream 13090 5176895 ~ 5180970 (+)
CI01000012_05184593_05185298 NA coding downstream 20787 5184593 ~ 5185481 (+)
CI01000012_05198747_05229460 PACS2 coding downstream 34366 5198172 ~ 5229678 (+)
CI01000012_05233556_05252071 DCAF5 coding downstream 69419 5233225 ~ 5252509 (+)
G71172 NA non-coding upstream 18996 5137470 ~ 5139968 (+)
G71523 NA non-coding upstream 124697 5034028 ~ 5034267 (+)
G71518 NA non-coding upstream 210676 4948035 ~ 4948288 (+)
G71513 NA non-coding upstream 228629 4927694 ~ 4930335 (+)
G71512 NA non-coding upstream 232327 4924984 ~ 4926637 (+)
G71171 NA non-coding downstream 140598 5304404 ~ 5305573 (+)
G71225 NA non-coding downstream 245416 5409222 ~ 5411516 (+)
G71548 NA non-coding downstream 386687 5550493 ~ 5561433 (+)
G71559 NA non-coding downstream 409011 5572817 ~ 5573228 (+)
G71562 NA non-coding downstream 445044 5608850 ~ 5611605 (+)
CI01000012_04495631_04501066 NA other upstream 658875 4495631 ~ 4501066 (+)
CI01000012_04424569_04425090 NA other upstream 733317 4424569 ~ 4425756 (+)
G70029 NA other upstream 2527579 2622478 ~ 2631385 (+)
G68725 NA other upstream 4474108 683523 ~ 684856 (+)
G71199 NA other downstream 249444 5413250 ~ 5416785 (+)
G71218 NA other downstream 372046 5535852 ~ 5538384 (+)
G71221 NA other downstream 374719 5538525 ~ 5540456 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006802 synj2bp coding NC_007124.7 CM002897.2 36557205 ~ 36566260 (-)