Gene
RNA
| Item | Value |
|---|---|
| gene id | G71512 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 4924984 ~ 4926637 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU81505 | True | 1526 | lncRNA | 0.41 | 2 | 4924984 | 4926637 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_04722087_04836261 | NA | coding | upstream | 87410 | 4722087 ~ 4837574 (+) |
| CI01000012_04647182_04692241 | KCNH5, KCNH5B | coding | upstream | 232508 | 4647182 ~ 4692476 (+) |
| CI01000012_04595199_04620295 | PPP2R5EB, 2A5E, PPP2R5E1, PPP2R5E | coding | upstream | 304531 | 4593867 ~ 4620453 (+) |
| CI01000012_04578508_04582452 | WDR89 | coding | upstream | 342374 | 4576995 ~ 4582610 (+) |
| CI01000012_04551570_04571150 | SGPP1 | coding | upstream | 353645 | 4551169 ~ 4571339 (+) |
| CI01000012_04939174_04962741 | TRIM9 | coding | downstream | 11509 | 4938146 ~ 4962741 (+) |
| CI01000012_04966772_04976751 | PYGL | coding | downstream | 40078 | 4966715 ~ 4976903 (+) |
| CI01000012_04981435_05004449 | NIN | coding | downstream | 54798 | 4981435 ~ 5005112 (+) |
| CI01000012_05006941_05018373 | SAV1 | coding | downstream | 80304 | 5006941 ~ 5018880 (+) |
| CI01000012_05035890_05063488 | MAP4K5 | coding | downstream | 108889 | 5035526 ~ 5064475 (+) |
| G71511 | NA | non-coding | upstream | 2917 | 4921724 ~ 4922067 (+) |
| G71506 | NA | non-coding | upstream | 8711 | 4916047 ~ 4916273 (+) |
| G71503 | NA | non-coding | upstream | 18769 | 4905925 ~ 4906215 (+) |
| G71491 | NA | non-coding | upstream | 46140 | 4878618 ~ 4878844 (+) |
| G71198 | NA | non-coding | upstream | 46572 | 4876405 ~ 4878412 (+) |
| G71513 | NA | non-coding | downstream | 1057 | 4927694 ~ 4930335 (+) |
| G71518 | NA | non-coding | downstream | 21398 | 4948035 ~ 4948288 (+) |
| G71523 | NA | non-coding | downstream | 107391 | 5034028 ~ 5034267 (+) |
| G71172 | NA | non-coding | downstream | 210833 | 5137470 ~ 5139968 (+) |
| G71529 | NA | non-coding | downstream | 234872 | 5161509 ~ 5162433 (+) |
| CI01000012_04495631_04501066 | NA | other | upstream | 424895 | 4495631 ~ 4501066 (+) |
| CI01000012_04424569_04425090 | NA | other | upstream | 499337 | 4424569 ~ 4425756 (+) |
| G70029 | NA | other | upstream | 2293599 | 2622478 ~ 2631385 (+) |
| G68725 | NA | other | upstream | 4240128 | 683523 ~ 684856 (+) |
| CI01000012_05177587_05180517 | SRSF5A | other | downstream | 250258 | 5176895 ~ 5180970 (+) |
| G71199 | NA | other | downstream | 486613 | 5413250 ~ 5416785 (+) |
| G71218 | NA | other | downstream | 609215 | 5535852 ~ 5538384 (+) |
| G71221 | NA | other | downstream | 611888 | 5538525 ~ 5540456 (+) |
| G71548 | NA | other | downstream | 623856 | 5550493 ~ 5561433 (+) |
