AMCG00000163 (actn1,LOC107705429,LOC107602958,LOC107739883)


Basic Information

Item Value
gene id AMCG00000163
gene name actn1,LOC107705429,LOC107602958,LOC107739883
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5714870 ~ 5742038 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000163
ATGCCGACTCTGCTTCTAATCCCTCATGCGCACAATGAAACGTTCACGGCTTGGTGCAACTCTCACCTGCGGAAGGCTGGGACACAGATTGAGAACATCGAGGAGGACTTTCGGGACGGACTCAAGCTGATGCTGTTGTTAGAGGTCATTTCAGGTGAGCGTCTGGCTAAACCTGAACGAGGCAAGATGCGAGTTCACAAGATTTCCAATGTTAATAAAGCTCTGGACTTCATCGCCAGTAAAGGGGTTAAACTGGTGTCCATTGGAGCTGAAGAGATTGTGGACGGCAATGCTAAGATGACCCTGGGAATGATCTGGACTATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTGGAAGAAACCTCTGCCAAGGAGGGCCTGCTGTTGTGGTGCCAAAGAAAGACAGCTCCCTACAAGAATGTCAACATCCAGAACTTTCACATCAGCTGGAAAGATGGTCTGGGCTTCTGTGCACTCATTCATAGGCATCGCCCTGAACTTATCGACTACGGGAAACTGCGCAAGGACGATCCAATGACCAACCTGAACACAGCCTTCGATGTGGCCGAGAAGTACCTTGACATTCCCAAGATGTTGGATGCTGAGGacatCGTTGGCACAGCCCGCCCAGATGAGAAGGCCATCATGACCTACGTCTCTAGCTTCTACCACGCCTTCTCGGGCGCCCAGAAGGGAAGAACCAGGAGGGACTCCTTTGCAGAAATGAACGCAGTTAAAAATATCATTAGCACGCTGAGGCCAGACGAGAAAGCCATCATGACCTATGTGTCGTGTTACTACCACGCATTCTCAGGCAAACAGAAGGCCGAGACGGCAGCCAATCGAATCTGCAAGGTGCTGGCGGTCAACCAGGAGAATGAACAGCTGATGGAAGACTACGAGAAGCTGGCCAGTGATCTGTTGGAATGGATCAGACGTACTATCCCCTGGCTGGAGAACAGAGCCCCAGAGAACACCATGCATGCCATGCAGCAGAAACTGGAGGACTTCCGGGATTATCGAAGGCTCCACAAGCCCCCCAAAGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACCCTGCAGACCAAGCTGCGCCTAAGCAACCGCCCCGCCTTCATGCCTTCCGAGGGCCGGATGGTCTCTGACATAGCCAACGCCTGGGGAGGGCTGGAACAGGCTGAGAAGGGCTATGAGGAGTGGCTACTCAACGAAATCAGGCGACTGGAGAGGCTTGATCACTTGGCAGAAAAATTCAGGCAGAAAGCTGCCATCCACGAGGCCTGGACAGAAGGTAAGGAGGAAATGCTGCAGCAGAAGGACTTTGAGACCGCCTCCCTGTCCGAGATCAAAGCTCTGCTGAAGAAACACGAGGCCTTCGAAAGTGACCTGGCTGCTCACCAAGACAGAGTGGAGCAAATAGCGGCCATTGCACAGGAGCTCAATGAGCTGGACTATTATGACTCTCCCAGTGTCAATGCCCGATGCCAGCGCATATGTGATCAGTGGGACTCCCTTGGCGCTCTGACTCAGAAGCGCAGTGAAGCTCTACAGAGAACTGAGAAACTGCTAGAGACCATTGACCAGCTGtacctggagtttgccaaaagggcGGCGCCTTTCAACAACTGGATGGAGGGGGCCATGGAAGACCTGCAGGACACATTTATTGTCCACACCATTGAGGAGATCCAGGGACTCAGCACGGCTCACGAGCAGTTCAAAGCTACGCTGCCTGAGGCGGACAAGGAACGTCAGGCCATCTTGGGCATCCACAACGAGGTCAGCAAGATTGTCCAGACCTACCACGTCAACATGGCTGGCACCAACCCCTACACCACCATCAACCCCCAGGAAATCAACGCCAAGTGGGACAAGGTCAGACAGCTGGTTCCTCAGAGGGACCAGGCCCTTATTGAGGAACACGCCCGGCAGCAGAACAACGAGCGCTTGCGAAAACAGTTCGCTAACCAGGCCAATGTCATCGGGCCATGGATCCAGACCAAGATGGAGGAGATTGGGCGCATTTCCATTGAGATGCATGGCACACTGGAGGACCAGCTGAGCCACCTGCGCCAGTATGAGAAGAGCATCGTCAACTACAAGCCAAAGATAGACCAGCTGGAGGGAGACCACCAGCTCATTCAGGAAGCCCTCATTTTCGACAACAAGCACACCAATTACACCATGGAGCACATCCGTGTTGGCTGGGAGCAGCTCCTCACCACCATCGCTCGCACCATCAATGAGATTGAGAACCAGATCCTGACGCGCGACGCCAAAGGCATCAGCCAGGACCAGATGAACGAGTTCAGGGCCTCCTTCAACCATTTCGACAGGGACCACTCCGGGACGCTGGGCGCGGAGGAGTTCAAGGCCTGCCTGATCAGCCTGGGCTTTGATATCGCCAACGACGCACAGGGGGAGGCTGAGTTTTCCCGTATCATGAGCATCGTGGACCCCAACCGACTTGGGCTGGTCACCTTCCAGGCTTTCATAGACTTCATGTCCCGGGAGACGGCCGACACGGATACCGCGGACCAGGTCATGGCCTCCTTCAAGGTGCTGGCTGGAGACAAGAACTATATCCTGGCAGACGAGCTGCGACGGGAGCTGCCCCCCGACCAGGCAGAGTACTGCATCGCCCGCATGGCCCCCTATACAGGGCCTGACGCTGTCCCGGGTGCGCTCGATTACATGTCCTTTTCCACCGCGCTCTATGGCGAAAGTGACCTTTGa

Function

symbol description
actn1 Predicted to enable actin binding activity and calcium ion binding activity. Is expressed in several structures, including head muscle; intestine; nervous system; ovary; and ventral intermandibularis anterior. Human ortholog(s) of this gene implicated in platelet-type bleeding disorder 15. Orthologous to human ACTN1 (actinin alpha 1).

NR:

description
PREDICTED: alpha-actinin-1-like isoform X2

GO: NA

KEGG:

id description
K05699 ACTN1_4; actinin alpha 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000163 True 2745 mRNA 0.55 23 5714870 5742038

Neighbor

gene id symbol gene type direction distance location
AMCG00000162 NA coding downstream 5267 5695755 ~ 5709603 (-)
AMCG00000153 slc8a3,LOC106953081,LOC107091425 coding downstream 54915 5658183 ~ 5659955 (-)
AMCG00000154 NA coding downstream 94048 5585947 ~ 5620822 (-)
AMCG00000157 NA coding downstream 141800 5544829 ~ 5573070 (-)
AMCG00000156 med6,LOC102793293 coding downstream 186044 5521455 ~ 5528826 (-)
AMCG00000171 dcaf5,LOC102780996 coding upstream 25500 5767538 ~ 5791438 (-)
AMCG00000172 NA coding upstream 49545 5791583 ~ 5822126 (-)
AMCG00000167 rtf1,LOC102785722 coding upstream 229742 5971780 ~ 5984573 (-)
AMCG00000178 NA coding upstream 250435 5992473 ~ 6000662 (-)
AMCG00000176 chp1 coding upstream 275508 6017546 ~ 6029796 (-)
G148486 NA non-coding downstream 2994 5711019 ~ 5711876 (-)
G148417 NA non-coding downstream 259381 5455246 ~ 5455489 (-)
G148416 NA non-coding downstream 260622 5451000 ~ 5454248 (-)
G148400 cdca4 non-coding downstream 334742 5377749 ~ 5380128 (-)
G148364 NA non-coding downstream 474187 5236868 ~ 5240683 (-)
G148610 NA non-coding upstream 405891 6147929 ~ 6148286 (-)
G148801 NA non-coding upstream 1398324 7140362 ~ 7140968 (-)
G148962 NA non-coding upstream 2016644 7758682 ~ 7758963 (-)
G149002 NA non-coding upstream 2213934 7955972 ~ 7956264 (-)
G149030 NA non-coding upstream 2561781 8303819 ~ 8304215 (-)
G148395 NA other downstream 372379 5338809 ~ 5342491 (-)
AMCG00000161 NA other downstream 637624 5071467 ~ 5077246 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other downstream 2155969 3552159 ~ 3558901 (-)
AMCG00000050 NA other downstream 4774035 890112 ~ 940835 (-)
G147324 NA other downstream 5229287 484720 ~ 485583 (-)
AMCG00000180 NA other upstream 262148 6004186 ~ 6012637 (-)
AMCG00000177 NA other upstream 303627 6045665 ~ 6067184 (-)
AMCG00000168 gchfr,LOC106583112 other upstream 408682 6150720 ~ 6154301 (-)
AMCG00000189 NA other upstream 465476 6207514 ~ 6209957 (-)
AMCG00000190 cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849 other upstream 471967 6214005 ~ 6216441 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_05262254_05301347 ACTN1 coding CI01000012 null 5262196 ~ 5302101 (+)