XLOC_006795 (cox16)


Basic Information

Item Value
gene id XLOC_006795
gene name cox16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36311894 ~ 36319308 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013076
AGTGGAACCCATTAGCCTCTCTTCAGTCCCACACGGACGTATTATGCGGCTGTACAAGGGATTGTGGGTTTACATGGCGGCGCCCTGTAGAGAGATGTTTAGTTATGTCCTACTGACTTTACTATAAAATATGTGTAATTGTAGCATGACGTAGATGAACTAAACATGTGGAATCAAGTTCGTAAGCTGCAAAATAACCGGACAGTAAAATACGGGGTCCCGATGCTGCTGCTGATCGTGGGAGGCTCGTTTGGTTTGAGAGAATTCACTCAGATTAGATATGATGCTCAGAAGATCCAAAGAAAGCTGGACCCGGCACTGGAAGCCAGAGTGAAGAGTCAGAAACAGTCTGTCATCCTTCAGGAGGAATATGAGaaaTTAAAGGATCAGGATTTGGACGGATGGAAGAACATTCGTGGTCCGCGTCCATGGGAGGATTCAAAGGAGCAGCAGAATGAGCAGCGCGCTCGACTCAATAAAGGCACATAACACTGAACACTTGAAACTCCCTCTACTGGCCTGAAGATGTAAGACACTTAGCCAAACCAGTGCAGTGTACATTGCTCATTCCTGGATAAAAATCGGCACTATTTATCTGATTTTGTTATAGAATAACAAAGACTCTATCTAAACTAGATAGACTGCAAATTTGGATTTTACAGACACATGAAAcgtcagtttttttttgtggggGTGGGAGGTGTCTTTTCTAATACACTGTAGTATgtatattttgctctctccagtgTCTTTTGTGCATAAATTATGTTACCAgtatataataatgtttaattcAGGACTCTGGCCTGTAGGAAAATATCCTCTTGTTTATTTCAATCTAGGCTACCAGGCGTACGAAAATAGTGTAATCAATGGTAGCCAATCATCTCGTAGTGTTtttcaaaaaatgaaattaaagtcCAATCATATTTCCATATCGATTCATTTGCAGTTAGTGTAGGCGGGAATTTCAGTATGCGGTGGTTGCTCTAAAGAGCAGAAGATTATGAAGTCTGACACGAAGATGATTCATTGCAATTATTACAAGATACAAGAACATGAATGAGCATTATAAGGTATGTTAAAAGAAACCGTAAAGCTTcctaaaatatatacaataatcaATGAATCTGTGTTTTAACTGCAAAACAACTGTCAATAAAAACTTCATGTAAACTGTCATGAAA

Function

symbol description
cox16 Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Predicted to be located in mitochondrial membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Orthologous to human COX16 (cytochrome c oxidase assembly factor COX16).

GO:

id name namespace
GO:0033617 mitochondrial cytochrome c oxidase assembly biological_process
GO:0031305 integral component of mitochondrial inner membrane cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04714 Thermogenesis
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-050417-60 Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Predicted to be located in mitochondrial membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Orthologous to human COX16 (cytochrome c oxidase assembly factor COX16).

Ensembl:

ensembl_id ENSDARG00000039136

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013076 True 1187 mRNA 0.39 4 36311894 36319308

Neighbor

gene id symbol gene type direction distance location
XLOC_006794 slc8a3 coding downstream 47033 36196778 ~ 36264861 (-)
XLOC_006793 map3k9 coding downstream 127193 36164639 ~ 36184701 (-)
XLOC_006792 med6 coding downstream 170408 36135122 ~ 36141486 (-)
XLOC_006791 pcnx1 coding downstream 177493 36053985 ~ 36134401 (-)
XLOC_006790 lgmn coding downstream 261567 36037970 ~ 36050327 (-)
XLOC_006796 actn1 coding upstream 1780 36321088 ~ 36391502 (-)
XLOC_006797 CR361558.1 coding upstream 79952 36399260 ~ 36399375 (-)
XLOC_006798 dcaf5 coding upstream 86966 36406274 ~ 36439061 (-)
XLOC_006799 pacs2 coding upstream 126879 36446187 ~ 36525982 (-)
XLOC_006800 srsf5a coding upstream 207498 36526806 ~ 36535128 (-)
XLOC_006471 BX537274.2 misc downstream 26046989 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 35485669 825904 ~ 826225 (-)
XLOC_006785 BX510990.1 non-coding downstream 349428 35962350 ~ 35962466 (-)
XLOC_006784 NA non-coding downstream 386410 35925042 ~ 35925484 (-)
XLOC_006779 BX663524.1 non-coding downstream 719517 35592242 ~ 35592377 (-)
XLOC_006775 CU138575.1 non-coding downstream 941210 35370569 ~ 35370684 (-)
XLOC_006774 NA non-coding downstream 1022457 35205297 ~ 35289437 (-)
XLOC_006804 BX927407.1 non-coding upstream 268462 36587770 ~ 36612159 (-)
XLOC_006814 NA non-coding upstream 676325 36995633 ~ 36997760 (-)
XLOC_006815 NA non-coding upstream 690504 37009812 ~ 37012236 (-)
XLOC_006817 NA non-coding upstream 790904 37110212 ~ 37110536 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G71171 NA non-coding CI01000012 null 5304404 ~ 5305573 (+)