Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00013057 |
| length | 597 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 2 |
| gene id | XLOC_006783 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 35904335 ~ 35908275 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-2439 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including axial mesoderm; nervous system; pectoral fin bud; presumptive neural retina; and shield. Orthologous to human MYCL (MYCL proto-oncogene, bHLH transcription factor). |
| ensembl_id | ENSDART00000147522 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013044 | lncRNA | downstream | 379543 | 35520974 ~ 35527405 (-) | True | XLOC_006778 |
| TCONS_00013869 | lncRNA | downstream | 617511 | 35205297 ~ 35289437 (-) | False | XLOC_006774 |
| TCONS_00013868 | lncRNA | downstream | 617573 | 35205297 ~ 35289375 (-) | False | XLOC_006774 |
| TCONS_00013872 | lncRNA | upstream | 17274 | 35925042 ~ 35925484 (-) | True | XLOC_006784 |
| TCONS_00013080 | lncRNA | upstream | 413596 | 36321364 ~ 36322604 (-) | False | XLOC_006796 |
| TCONS_00013088 | lncRNA | upstream | 622462 | 36530230 ~ 36535072 (-) | False | XLOC_006800 |
| TCONS_00013091 | lncRNA | upstream | 623792 | 36531560 ~ 36532726 (-) | False | XLOC_006800 |
| TCONS_00013096 | lncRNA | upstream | 661179 | 36568947 ~ 36582281 (-) | False | XLOC_006803 |
| TCONS_00013053 | mRNA | downstream | 14643 | 35880664 ~ 35892305 (-) | False | XLOC_006782 |
| TCONS_00013052 | mRNA | downstream | 14705 | 35880573 ~ 35892243 (-) | False | XLOC_006782 |
| TCONS_00013054 | mRNA | downstream | 14705 | 35889149 ~ 35892243 (-) | False | XLOC_006782 |
| TCONS_00013055 | mRNA | downstream | 14897 | 35889243 ~ 35892051 (-) | True | XLOC_006782 |
| TCONS_00013049 | mRNA | downstream | 61987 | 35787873 ~ 35844961 (-) | False | XLOC_006781 |
| TCONS_00013059 | mRNA | upstream | 66594 | 35974362 ~ 35976986 (-) | True | XLOC_006786 |
| TCONS_00013060 | mRNA | upstream | 76229 | 35983997 ~ 35984530 (-) | True | XLOC_006787 |
| TCONS_00013061 | mRNA | upstream | 76853 | 35984621 ~ 35985772 (-) | True | XLOC_006788 |
| TCONS_00013062 | mRNA | upstream | 87470 | 35995238 ~ 36034582 (-) | True | XLOC_006789 |
| TCONS_00013063 | mRNA | upstream | 130202 | 36037970 ~ 36049008 (-) | False | XLOC_006790 |
| TCONS_00013051 | other | downstream | 64359 | 35826667 ~ 35842589 (-) | True | XLOC_006781 |
| TCONS_00013045 | other | downstream | 314571 | 35592242 ~ 35592377 (-) | True | XLOC_006779 |
| TCONS_00013041 | other | downstream | 447017 | 35430544 ~ 35459931 (-) | True | XLOC_006776 |
| TCONS_00013038 | other | downstream | 536264 | 35370569 ~ 35370684 (-) | True | XLOC_006775 |
| TCONS_00013037 | other | downstream | 685335 | 35206835 ~ 35221613 (-) | False | XLOC_006774 |
| TCONS_00013058 | other | upstream | 54582 | 35962350 ~ 35962466 (-) | True | XLOC_006785 |
| TCONS_00013072 | other | upstream | 227648 | 36135416 ~ 36141351 (-) | True | XLOC_006792 |
| TCONS_00013079 | other | upstream | 413323 | 36321091 ~ 36391491 (-) | False | XLOC_006796 |
| TCONS_00013081 | other | upstream | 413663 | 36321431 ~ 36330899 (-) | True | XLOC_006796 |
| TCONS_00013082 | other | upstream | 491492 | 36399260 ~ 36399375 (-) | True | XLOC_006797 |
