XLOC_006805 (cdkn3)


Basic Information

Item Value
gene id XLOC_006805
gene name cdkn3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36612930 ~ 36621926 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013100
TATTCGCAGTGTGATAAGTCGACAGGGGCAATGAGGACAAGTGAGTTTGATTCATCTGACGAAGAGGATTTTGGTGAAGAGGAAACGACACCTTTTCAGATCTCATGGTTATCTCTGTCAATGGTGGAGTGCTCCCAGTCTCTTGGCATCTGTTCTCTACCTGGGTGCAGATATAAAGAAAAcagaagaaacctgcagaaagatGTTGCCGAGATGTGTGATCAGGGTGTGGAGGATGTGTTTGTGTTCTGCACCAGAGGAGAGCTGGTGCGCTACAGAGTGCCGTGTCTGCTAGAGGTTTATTCTCAAAGGGGTCTCAGAGTCCATCACTTCCCCTTCCCTGACGGTGGAGCTCCAGAGCTTTATCAGTGCAGCTGCGTTCTGGAGGAGCTCAAGGACTGCCTGCAAAACCAACGCAGAACTGTCATACATTGTTATGGAGGTCTGGGACGCTCTGGGCTGATTGCTGCATGTTTGCTGCTGCAGCTCTCTGTGTCCATGACACCCAGCACAGCTCTGGAGATCCTGCGGGAGCTGAGAGGAGCCGGAGCCATTCAGACTGTCAAACAATACAACTTCCTTCATGAGTTTCGGGAGAAGTTTGAAGCATATCAGGAAACCAAAGAGCGGCTCGCAGAGAGATCTGTGTCCAGATGATCAACCTGACATCCAGATGACCTTTAGGGAAAAATAACAATTACCTGGTGTTCTTTGCTCTGTGGCTTTCTCTGGTTTGATCATGAATGCTGTTGTTTGCTTTCTGATAGCACTTTaaaaattctgtatttttataagtcaaactattaataataatactgagcTTAATATATAACTTAAACTTCGCAATGAAATGATGCTTGTTCACTGAAATGTGGTTGAAAGTTACATAAACAAGATGTTGTCTGATA
>TCONS_00013101
ATTCGCAGTGTGATAAGTCGACAGGGGCAATGAGGACAAGTGAGTTTGATTCATCTGACGAAGAGGATTTTGGTGAAGAGGAAACGACACCTTTTCAGATCTCATGGTTATCTCTGTCAATGGTGGAGTGCTCCCAGTCTCTTGGCATCTGTTCTCTACCTGGTAAAACGTattgatgaataaataatgtgtctTTTTGTGCTCTTTCAATATTTGTGAAGATTTCTGCTCATTTCAGGGTGCAGATATAAAGAAAAcagaagaaacctgcagaaagatGTTGCCGAGATGTGTGATCAGGGTGTGGAGGATGTGTTTGTGTTCTGCACCAGAGGAGAGCTGGTGCGCTACAGAGTGCCGTGTCTGCTAGAGGTTTATTCTCAAAGGGGTCTCAGAGTCCATCACTTCCCCTTCCCTGACGGTGGAGCTCCAGAGCTTTATCAGTGCAGCTGCGTTCTGGAGGAGCTCAAGGACTGCCTGCAAAACCAACGCAGAACTGTCATACATTGTTATGGAGGTCTGGGACGCTCTGGGCTGATTGCTGCATGTTTGCTGCTGCAGCTCTCTGTGTCCATGACACCCAGCACAGCTCTGGAGATCCTGCGGGAGCTGAGAGGAGCCGGAGCCATTCAGACTGTCAAACAATACAACTTCCTTCATGAGTTTCGGGAGAAGTTTGAAGCATATCAGGAAACCAAAGAGCGGCTCGCAGAGAGATCTGTGTCCAGATGATCAACCTGACATCCAGATG

Function

symbol description
cdkn3 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytoplasm. Is expressed in myotome and somite. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human CDKN3 (cyclin dependent kinase inhibitor 3).

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0007050 cell cycle arrest biological_process
GO:0016311 dephosphorylation biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-060427-2 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytoplasm. Is expressed in myotome and somite. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human CDKN3 (cyclin dependent kinase inhibitor 3).

Ensembl:

ensembl_id ENSDARG00000039130

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013100 False 908 mRNA 0.45 8 36612930 36621926
TCONS_00013101 True 751 lncRNA 0.48 7 36613162 36621925

Neighbor

gene id symbol gene type direction distance location
XLOC_006804 BX927407.1 coding downstream 771 36587770 ~ 36612159 (-)
XLOC_006803 lgals3a coding downstream 30589 36568635 ~ 36582341 (-)
XLOC_006802 synj2bp coding downstream 46670 36557205 ~ 36566260 (-)
XLOC_006801 FP103009.1 coding downstream 67672 36537426 ~ 36545258 (-)
XLOC_006800 srsf5a coding downstream 77802 36526806 ~ 36535128 (-)
XLOC_006806 sos2 coding upstream 17029 36638955 ~ 36663358 (-)
XLOC_006807 l2hgdh coding upstream 44736 36666662 ~ 36680531 (-)
XLOC_006808 cdkl1 coding upstream 71226 36693152 ~ 36703164 (-)
XLOC_006809 map4k5 coding upstream 83669 36705595 ~ 36761454 (-)
XLOC_006810 sav1 coding upstream 165151 36787077 ~ 36798204 (-)
XLOC_006471 BX537274.2 misc downstream 26348025 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 35786705 825904 ~ 826225 (-)
XLOC_006797 CR361558.1 non-coding downstream 213555 36399260 ~ 36399375 (-)
XLOC_006785 BX510990.1 non-coding downstream 650464 35962350 ~ 35962466 (-)
XLOC_006784 NA non-coding downstream 687446 35925042 ~ 35925484 (-)
XLOC_006779 BX663524.1 non-coding downstream 1020553 35592242 ~ 35592377 (-)
XLOC_006814 NA non-coding upstream 373707 36995633 ~ 36997760 (-)
XLOC_006815 NA non-coding upstream 387886 37009812 ~ 37012236 (-)
XLOC_006817 NA non-coding upstream 488286 37110212 ~ 37110536 (-)
XLOC_006819 AL845493.1 non-coding upstream 556676 37178602 ~ 37178716 (-)
XLOC_006829 NA non-coding upstream 906235 37528161 ~ 37535785 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_05124400_05129545 NA coding CI01000012 null 5124160 ~ 5129746 (+)