XLOC_006810 (sav1)


Basic Information

Item Value
gene id XLOC_006810
gene name sav1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36787077 ~ 36798204 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013108
GGGTTGGACATTCAGCTGGTAAAAGTTTTCGTGCGCTTTTCTCTGGGTGTTGTTTGGACAGCGCTCGGGGGAGACTAACGTTATTTAATCGTCGGAAAGAGTTCGTAATGTTCGACTAAACACCGAAAACTGCCAAACGTCCACTAAACGCAAACGAATGGCCAGTTTTGTGCTTGTTTTCAGACTGTAGCCATGATGACTCCAAATTAGCTATCGGGCTAAACGCTCCGAAATGGACTCGGTTTCGCGTGTCAGTGCCAACCTGGATCCGGATTTCAGGATGAAACCGAAGTCTAATCGGTCCAGAGTCGATTCGGATTAACAATGCTCTCCAGAAAGAAGAGTAAAAACGAAGCGTCCAAACCACCCGAAGTTCAGGGCAAATATGTGAAGAAAGAAACGTCCCCTCTTCTGAGAAATTTGATGCCCTCATTTATCCGCCATCCAACGTTCCTTCGACGCGAACCTCCATTAGTGGAGCCGGTTTCGGCTGGTGTGCCTGGTCCCGGTCCCGGTCCGTACACCACTGGATCTGTTGGAGATGTTAGCGGCCCTAAGAGTTTCCTGCGCAATGCTCCTCCACGGACCCCGCTAGAGGTTTCACGCAGAGAGAGTCACCGTCTGTCTGCCCCGCCACATCTTCATCGTGATTACTCCCCTTCCTCACCATCCTACATCAGCGATGCCAGTTCTGTAACAGAGAACGGAGACAACGGCCCGTATTACTATCCTCCAGAACCATACTACAATAACCAACCCAGACGAGCACGCAGACCAGACCACTTTAATGAGAACTACAGATACTATGACCACAATGAACTCAACTTCCCACGAAACCCAGGACAGCCCCAGACGCCTCAGCCACACAGCCGCCCTCCACCTGcaATTGGCCGAGTGCCAGCAAAGTCAGTGGGTAATCTGACGACCATGAGCGGGGAGGAGGCGGCTCTTCCTCCTGGCTGGACTGTAGATTGGACGATACGAGGAAGGAAGTATTTCATCGATCACAACACAAACACGACTCATTGGAGCCATCCGCTGGAGAGGGAGGGGCTTCCGCCAGGCTGGGAGAGGGTGGAGTCGGCCGAGTTTGGAGTCTATTATGTTGACCACATCAACAAACGTGCCCAGTACAGACACCCCTGTGCACCCAGTGTGCCTCGTTATGACCAGCCCCCTCCCCCACCCGTCACCTACCAGCCCCGCCCACCAGAACGCAACCCGCCTGTACTGGTACCAGCAAACCCGTATCACTCAGCTGAGATTCCAGACTGGCTACAGGTGTACGCCAGAGCTCCACTAAAATATGACCACATCCTGAAGTGGGAGCTCTTCCAGCTGATGGATCTGGACACATATCAGGGGATGCTGAAGCTGCTCTTCATGAAGGAGCTGGAGTGCATCGTCAAATCTTATGAAGCATATCGACAAGCGCTGCTGACCGAACTGGACACGCGCAAACAGCGGCAGCAGTGGTACGCTCAGCAACCAGCCAAAAACTACCCTCCAAACATCTGACTGTTTGTTATGACACACTCAGACAGCTTACTTATCAGTGCCTTACACTCTCACATCCGACTCCAAATATAAAGCCCAAAGAGAGACTCTACACAGAACGTGACACTATTACTCTTCTATTATTATACGGCAGTGTGTTACGAGTTTTGACTGTGTgttggaagtgtgtgtgtgcgtgtgtgtctttgTGCATATGTTGGCCTGCAGGCAGCTGTGGGTTATGGCAGGACTCAGTCATTCTTTATGGCATTGTCTTTATGGACAATCACTTCTATCAGTTATCACTGATTTATGTTTAATCCTATTTGCAATGATAGTTTCGCTTTTAGGGCGAACACACAAAAATGCATCCAGGTCACATTTCAGGCCGAATTTATAGTTCATGGAAAGAAAATGAAGCCTGGTTTGGATTGTTTAgcatttaattaacaaataataaataataaaagtcactattttttttttaatcatagtaATTAAAGTTGCTTTAGTATTCTGAATGTTGAGCAATCTTCATGGTGCTTTATTTTCTTGAAGTAAAATATGACCTGGACATTTTTGTAAGTTCGTCCTTGATTGTTTGTGTGGATTCCTTTTTTTAAGGAATTAGCTTCTTATATTTAAGGATAACATTTTGAGGCTGAATCGTCACTTTGAATGAAGTGAAGGCGTTTTTAAAGAGGTTAGTGCTTGTTTTTTCCCCagttaaaaatgtgtgtaaaaagtATTTTCAGCATCATCACTAAATAAACCAGGAccttgta

Function

symbol description
sav1 Predicted to enable molecular adaptor activity. Acts upstream of or within cilium assembly. Orthologous to human SAV1 (salvador family WW domain containing protein 1).

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0007165 signal transduction biological_process

KEGG:

id description
ko04390 Hippo signaling pathway
ko04391 Hippo signaling pathway - fly
ko04392 Hippo signaling pathway - multiple species
ko04214 Apoptosis - fly

ZFIN:

id description
ZDB-GENE-040912-28 Predicted to enable molecular adaptor activity. Acts upstream of or within cilium assembly. Orthologous to human SAV1 (salvador family WW domain containing protein 1).

Ensembl:

ensembl_id ENSDARG00000006196

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013108 True 2282 mRNA 0.47 5 36787077 36798204

Neighbor

gene id symbol gene type direction distance location
XLOC_006809 map4k5 coding downstream 25623 36705595 ~ 36761454 (-)
XLOC_006808 cdkl1 coding downstream 83913 36693152 ~ 36703164 (-)
XLOC_006807 l2hgdh coding downstream 106546 36666662 ~ 36680531 (-)
XLOC_006806 sos2 coding downstream 123719 36638955 ~ 36663358 (-)
XLOC_006805 cdkn3 coding downstream 165151 36612930 ~ 36621926 (-)
XLOC_006811 nin coding upstream 2130 36800334 ~ 36844945 (-)
XLOC_006812 pygl coding upstream 48585 36846789 ~ 36863039 (-)
XLOC_006813 trim9 coding upstream 70161 36868365 ~ 36911118 (-)
XLOC_006814 NA coding upstream 197429 36995633 ~ 36997760 (-)
XLOC_006815 NA coding upstream 211608 37009812 ~ 37012236 (-)
XLOC_006471 BX537274.2 misc downstream 26522172 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 35960852 825904 ~ 826225 (-)
XLOC_006804 BX927407.1 non-coding downstream 174918 36587770 ~ 36612159 (-)
XLOC_006797 CR361558.1 non-coding downstream 387702 36399260 ~ 36399375 (-)
XLOC_006785 BX510990.1 non-coding downstream 824611 35962350 ~ 35962466 (-)
XLOC_006784 NA non-coding downstream 861593 35925042 ~ 35925484 (-)
XLOC_006779 BX663524.1 non-coding downstream 1194700 35592242 ~ 35592377 (-)
XLOC_006817 NA non-coding upstream 312008 37110212 ~ 37110536 (-)
XLOC_006819 AL845493.1 non-coding upstream 380398 37178602 ~ 37178716 (-)
XLOC_006829 NA non-coding upstream 729957 37528161 ~ 37535785 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_05006941_05018373 SAV1 coding CI01000012 null 5006941 ~ 5018880 (+)
bowfin (Amia calva) AMCG00000277 LOC106517965,LOC107602930 coding CM030141.1 CM030141.1 9414677 ~ 9427542 (+)