XLOC_006808 (cdkl1)


Basic Information

Item Value
gene id XLOC_006808
gene name cdkl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36693152 ~ 36703164 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013104
CTTGTAAATAGCGTGTTTTCTTCTCCATGCGAACTCAAACACATCTTCACGAAACACGGACACGGTTATATCTGTCCGTCTGATTATCCAAACACGAACTTCTCCGCTTAATTTGACGACACTTCATCTTGGTAGTTTGCTAATTGTTGTACACTTTCTTTTTATTAAGCTGTAAAGCGAATATTTTGATGATACGTTAGAAGGTTTGACATTTAGATCATCCTCGAGGTGACCGTTGTCATAAGTTTGTCTTGCTGTAGCGATGGAGAAGTATGAGAAGATCAGTAAGATTGGCGAAGGCTCGTACGGCGTTGTGTTCAAGTGCAGGAATAAAGACACCGGACAGATTGTCGCCATCAAGAAGTTTGTGGAGTCTGAGGATGATCCCATCATTAAGAAAATAGCGCTCAGAGAAATCCGCATGCTGAAGCAACTAAAACATCCAAACCTGGTGAATCTGATGGAGGTGTTCAGAAGAAAGAGAAAACTTCACCTGGTGTTTGAGTACTGCGACCACACTGTCCTGAATGAGCTGGACAGATACCCACGAggtGTTCCAGAGCATATGGTTAAAAGCATCATCTGGCAAACACTTCAGGCTGTGAACTTCTGCCACAAacaaaatTGTATTCACCGAGATGTGAAGCCTGAAAACATTCTCATCACCAAACATCAGGTCATCAAACTCTGCGACTTCGGCTTTGCCAGGATTCTTACGGGTCCGTGTGATTATTACACAGATTATGTCGCGACACGGTGGTATCGAGCTCCAGAACTGTTAGTGGGAGACACACAGTACGGCCCGCCGGTAGACGTCTGGGCTGTAGGATGTGTTTTTGCGGAGCTACTCTCTGGCGCCCCCTTGTGGCCGGGCAAATCTGATGTAGACCAGCTGTATCTGATCAGGAAAACTCTGGGTGAGTTGATTCCTCGACATCAACAGGTGTTCAGCACCAACCAGTTCTTTAGCGGCGTTTGTGTGCCTGAGCCACAGGAGATGgagCCTCTTGAACTGAAGTATCCCAACTTGTCGTACCAGGCACTGAGCCTCATGAAGGGTTGTCTGCGGATGGATCCGGCTGAGAGGTTGTCCTGTGAGCAGTTACTGGAACAGCCCTACTTTGACAGTCTGCGAGAGGAGAGCGAGAGTGTGACGCGTGAACTGGACCGCAAGAAACGCACACGGCAGCCACGCAAACACCTGCCACCTGGGTATCTGCCTCAGTTGGCTAGCAGCACCGTCTTTCCTGCAGTGGAGAACAGAAGAAACTACAACAACCTGCGCAAATTCAACTATCATCTTCCCAACATATGATGGAAGACGACTCATCGGGAACCTGAGATGTGACCATCCACCTcccagctggtgtgtgtgtgtgtgtgtgagtgagacagACAAAGGGCTCTGCTCTGCCTGTAGAACAATGATGTCACACTGCCAAAGCAAAGACTCACAGAGGCATTTCTGTCACATGTAAAtgacaacagcaataataacatTCAAATCAAA

Function

symbol description
cdkl1 Enables protein kinase activity. Acts upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including hypochord; nervous system; pleuroperitoneal region; spinal cord neural keel; and spinal cord neural tube. Orthologous to human CDKL1 (cyclin dependent kinase like 1).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040808-34 Enables protein kinase activity. Acts upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including hypochord; nervous system; pleuroperitoneal region; spinal cord neural keel; and spinal cord neural tube. Orthologous to human CDKL1 (cyclin dependent kinase like 1).

Ensembl:

ensembl_id ENSDARG00000017329

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013104 True 1510 mRNA 0.47 10 36693152 36703164

Neighbor

gene id symbol gene type direction distance location
XLOC_006807 l2hgdh coding downstream 12621 36666662 ~ 36680531 (-)
XLOC_006806 sos2 coding downstream 29794 36638955 ~ 36663358 (-)
XLOC_006805 cdkn3 coding downstream 71226 36612930 ~ 36621926 (-)
XLOC_006804 BX927407.1 coding downstream 80993 36587770 ~ 36612159 (-)
XLOC_006803 lgals3a coding downstream 110811 36568635 ~ 36582341 (-)
XLOC_006809 map4k5 coding upstream 2431 36705595 ~ 36761454 (-)
XLOC_006810 sav1 coding upstream 83913 36787077 ~ 36798204 (-)
XLOC_006811 nin coding upstream 97170 36800334 ~ 36844945 (-)
XLOC_006812 pygl coding upstream 143625 36846789 ~ 36863039 (-)
XLOC_006813 trim9 coding upstream 165201 36868365 ~ 36911118 (-)
XLOC_006471 BX537274.2 misc downstream 26428247 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 35866927 825904 ~ 826225 (-)
XLOC_006797 CR361558.1 non-coding downstream 293777 36399260 ~ 36399375 (-)
XLOC_006785 BX510990.1 non-coding downstream 730686 35962350 ~ 35962466 (-)
XLOC_006784 NA non-coding downstream 767668 35925042 ~ 35925484 (-)
XLOC_006779 BX663524.1 non-coding downstream 1100775 35592242 ~ 35592377 (-)
XLOC_006814 NA non-coding upstream 292469 36995633 ~ 36997760 (-)
XLOC_006815 NA non-coding upstream 306648 37009812 ~ 37012236 (-)
XLOC_006817 NA non-coding upstream 407048 37110212 ~ 37110536 (-)
XLOC_006819 AL845493.1 non-coding upstream 475438 37178602 ~ 37178716 (-)
XLOC_006829 NA non-coding upstream 824997 37528161 ~ 37535785 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_05067336_05074406 CDKL1 coding CI01000012 null 5066928 ~ 5074539 (+)
bowfin (Amia calva) AMCG00000287 cdkl1 coding CM030141.1 CM030141.1 9487917 ~ 9501368 (+)