RNA id: TU188032



Basic Information


Item Value
RNA id TU188032
length 990
RNA type TUCP
GC content 0.41
exon number 2
gene id G149424
representative True

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9969324 ~ 9970801 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTCTGAAAAGTTGACAGCTAGCGGAATAGTCCCAGCTACATAGCAGCCCACTAACATTGCCAGCGAAAAAAGACTGATTGAGCTAAAATCGTCCATTTTCGGTCCCTAATGTTGATCTGCAAGTCAGATTACACTTGgagcagtttattattattttattataacctAATCAGTGTATACACAATAGAAACTAGAACGGTCACCGAGccaatcaaaatgtgaaatgttaaataacACTTGTAATGTACGGATAAACTGACTattaaatactattaaatagagaaaatatcCGGTTTTATTACGAGCAATTCCCGTGGATCCGATTTAACCCGCACAAATAggtaaaaatgttaatttaataaggTGGTTTAACCTATAGTTGAATTTATCTCAAGTAAGAGCAAAGTGCTTCCTCGTTATTGCCTCAAAAGTCAGATGCAGAGAAGCAGGGATCGGCGGGTTTCTAATCTGATCGCCTCATATTATTCCTCCGATTCCTGATATGAGGTGAAATAATTACATGGCTATTTTCTCGTTCAACtggacaacagcagcagcagccatggTGCAGAGTGGCAGTGGGAACAGCATCCGGTTTCAGTCCCGCCCCTTCCGGATAACCCCGTCACCAAGGCAACCGCCGTGTAGACATGGCGGAAGGTGTGCAGAGCTTATCCTCCACCAGCTACAGTGTCCTCTTGTTTTAAAGCTGCAGCAAGAGAAGCAGGCATTGATGGATAAGAACAACCTCCTGGCGGAGAAGATCGCTGGTATCCAAGCCTCTTCTGGATGTACACACAACTGGAACAGGCCAAAAAGATGACGTACACTCTTATTCACACACCGTCTCAGCACTAACATCgggaaacaaaaatatgattgtATCAGTGTTGATCTATTTTACTGTTATTTGGATTATGGACACAGCACTGACCACTAGTAAtgtattgcatatttttaaataaatgtaatgtgatGCATGGTTACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU188022 lncRNA upstream 6753 9957713 ~ 9962571 (+) True G149416
TU187938 lncRNA upstream 192336 9719947 ~ 9776988 (+) True G149359
TU187924 lncRNA upstream 395760 9561557 ~ 9573564 (+) False AMCG00000281
TU187903 lncRNA upstream 453724 9514822 ~ 9515600 (+) False AMCG00000286
TU187853 lncRNA upstream 482643 9483359 ~ 9486681 (+) False AMCG00000285
TU188017 lncRNA downstream 2247 9973048 ~ 9975172 (+) True G149415
TU188070 lncRNA downstream 50621 10021422 ~ 10021853 (+) True G149450
TU188079 lncRNA downstream 58893 10029694 ~ 10030786 (+) True G149454
TU188081 lncRNA downstream 63773 10034574 ~ 10035072 (+) True G149455
TU188090 lncRNA downstream 77595 10048396 ~ 10048621 (+) True G149464
AMCG00000292 mRNA upstream 49242 9911136 ~ 9920082 (+) True AMCG00000292
AMCG00000294 mRNA upstream 92380 9864987 ~ 9876944 (+) True AMCG00000294
AMCG00000293 mRNA upstream 128895 9828089 ~ 9840429 (+) True AMCG00000293
AMCG00000282 mRNA upstream 222316 9721890 ~ 9747008 (+) True AMCG00000282
AMCG00000283 mRNA upstream 263875 9688747 ~ 9705449 (+) True AMCG00000283
AMCG00000306 mRNA downstream 31920 10002721 ~ 10010111 (+) True AMCG00000306
AMCG00000307 mRNA downstream 93010 10063811 ~ 10072297 (+) True AMCG00000307
AMCG00000297 mRNA downstream 122192 10092993 ~ 10100250 (+) True AMCG00000297
AMCG00000305 mRNA downstream 578029 10548830 ~ 10549199 (+) True AMCG00000305
AMCG00000304 mRNA downstream 579131 10549932 ~ 10550914 (+) True AMCG00000304
TU187550 other upstream 1388212 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 2606617 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 2606617 7361020 ~ 7362707 (+) True AMCG00000217
TU187266 other upstream 2672660 7290666 ~ 7296664 (+) False AMCG00000216
TU188165 other downstream 563789 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 2011659 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 2708869 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 3720038 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 4162337 14133138 ~ 14153840 (+) True AMCG00000412

Expression Profile