RNA id: TU187266


Basic Information

Item Value
RNA id TU187266
length 2981
RNA type TUCP
GC content 0.48
exon number 8
gene id AMCG00000216
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 7290666 ~ 7296965 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcGAAGGCGACCCTCGACTGCAAGTGCCAGCCAATGGGAGAGCAGGAGCACTGTGGGAGGGAACGCCGTAGACGCCATTTTGTCCTGTTTATATCGAAGGTCTGCGTCATTTCATAactcttacatttaaaatagagaacCCCCATAAAGATGAGCGGCTGTCGTGTCTTCATCGGCCGTCTGAACCCCTCGGCCCGGGAGAAGGATGTGGAGAGGTTCTTCAAGGGTTACGGGAGAATTCGGGATATCGACTTGAAACGGGGCTTTGGTTTTGTGGAGTTTGATGACCCTCGAGATGCAGAAGATGCCGTTTATGAACTCGATGGAAAAGAGCTGTGCAATGAAAGGGTGACAATCGAGCATGCCCGTGTGCGGCTGCGTGGGGGACGAGGACGGGGCGGCCGCTACCCTGACCGCTACAGTCAGAGGTCGAGGGACAGTCGGAGGAATCCCCCTCCTGTCCGCACCGAAAATAGGCTCATTGTGGAGAATTTGTCCTCCAGAGTCAGTTGGCAGCCTGTCTGTTGTGTCGTATGGAAGAGATTGCCTTTGGGCGTGGAGTTAAGGCCCTCAGTGTCGCGCTCTCGTGGTTGAGCATGGTTCATACCAGCCAGTCTGTGCTACTGCCACACCTAGTTCACACGGGGGCCTCCTGCAGATCGCTTGAGCGCTTGCTGGGTCCTTGCTGTAAAGTCGCTGGGTGCACTTCCTTCGAAAGTGCCGTCTGGGCCCCTTTGCTGCGATCGAGCAAGCGCCAGAgaaaagcgagagagagagagagagtgttttgAGCGAGTCGGTAATTTGAGAGGCTCCAATCCTTCCCGAGTGGTGCGAGTTGGTTCCAGGTGCTGCAGGAAAAATTTGAGGTGCGAGATTTTTTTAGGAGACCCTGTGTCCTGGTCCAAATGGCACACCCAAGGTATTAGCAAACACTTAAACACCCTTCCTCCTCCAGCCTGTAACGAGGGCAGTGCAATTATACTGAGTGGATGTGGAAGGTGTCAGATGAGTCCAGTGCCTTCCCAAACACTTTTTAAGAGTTGCCATGAAATTCTGGGGTCCAAGAATGTAAGGTAGCAACATTCAGTGTCCTTCATCCTCCTCAGTTCCACTTTGAAGGAGGTGGCTGTCGCACATTTCcttgtaaaacattttctgactGATATCCCCATGCTGGTTCTACTTTAAAACTGtccaaaaatagtttttataagGAAATATGATGCAGCTGTATCTTCAAAGACTCCTCCCAGAATGCCATACTTTATAGCCGGATTGCAACACATAATATTACTTAGTTATCTTGCCCACCTTCTGTCAGCAGCCAGGAGATCTGAACAATATGCAATGCTGCCCtttgtaaacacacacaatatgagCAGAGCAGCTGAAGTTCTGTAGTCTTTTACAGTATTGTAATATTCACAGCCAGCTGTCTAAGTAAAGGAAGGCAGATGCGTTTCCATTTGTAACACAAAcgtacaaacacacaatgtgtttggtttttttttgttccccatTAGGTATTGGTGTTGTGGGAAATGCCAACCTTCCTTTAATTGGAAGTTCTGCtgtcaatgtttattttatgaaacaGATAGAAACTGTTTAAAGAGATTAGGGCAATCTTGGTAGTCTGGATGATTCTTGGACCCCTTCCCCACCTAGGATAGGCTGTATTCTTTATGTATATCTAACTTTTCTTCTTTCAGTTAGTcttgaatacatatatatataaaatttgtCTTGTTGTACCTCTCTGTATCAACACGTGCCTAACTAGACTGGTCTTGTGTGTAGGATCTGAAAGATTTCATGAGACAGGCGGGGGAGGTTACTTTTGCAGATGCCCACAGGCCTAAACTAAATGAAGGGGTAGTAGAGTTTGCCTCTTACAGTGATCTAAGAAATGCTCTTGATAAGCTGTCTGGGAAAGAAATCAATGGCAGAAAAATCAAACTCACAGAAGCAATTAAACGGAGGTCCAGAACCCGCTCTCGCTCTGGCAGCTCGTCCCGCTCCAGGTCTCGCTCGCGCTCGCGCTCCCGGAGTCGCTCTAGGTCCCGCAGTGCCAAGTCCTACAGCCGCTCTCGTTCCCGCAGCCGTTCGCGCTCACGCTCCGCCAGCAGCTCCCCGGCCCCGGACAAGGAGGCGAAACGCAGCCCCCGCGCCCGCTCCGCATCCCCGGCCTCCCCCGAGCGCCCCCGACCTCGCTCGGTGACTCGCTCGCCCTCTGCCGAGAGTCGGGACTGagcccccctccccacctccctTCTCGGATAACTCTGAGCTCCTGACGGGCCGAGTCAAGAGAGCAGCTCTCCCCACATCTGTGTCCACCCCTTTCGTCCCGTGGTAGGTGTTCGAACACTTCTGTGTGAAAGTAGTCCTCCATCTCGGGGATTTGGAATATGTGCTTCACCGGAACTGACTCAATTTCATGTCGCAGTGTcacgaaaaaacaaaacattagggTGTCGGATCTCAAAGCACCGGGAAACAAGGGTGTCAAAAGAGTCGGCAGTCAAGACGTTGATTCGACAGCAACATACAGTAAAGCCCCCCTGAATGAGGTCAATTGTGTTctgtctttaatatttaaatgagtGGATTTGTCAGTtactttgttgtcttttttttattttgtatttgttatcctgtaatgatttcttttttaaaaccatattgCAATCACTGGTAGCACTTGATGAACTTTTGCAGACTTCCTGCAAATATTTCTTCCTCTTGGCAGACAAGTGTACAATAatgttttaacctttttttttttttttgtacagaagTGTTGTTTTTCAACTGTGCAGCATTTGGGTAAATTTTGTATAAaagatataaataacaaatgcacATAAGTGGTGAGTGGCAAGACCGATTTTAAGCAGGGATCCTGGGAAAAATGGTTCAGACAACAATGTAAATACTTTGTGTACCACTTCTGAATAAATATGATCTTGCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187229 lncRNA upstream 198206 7092025 ~ 7092460 (+) True G148791
TU187204 lncRNA upstream 355506 6933300 ~ 6935160 (+) True G148768
TU187198 lncRNA upstream 363412 6923294 ~ 6927254 (+) True G148764
TU187052 lncRNA upstream 983799 6306628 ~ 6306867 (+) True G148656
TU187025 lncRNA upstream 1074207 6215756 ~ 6216459 (+) True G148631
TU187283 lncRNA downstream 17243 7313907 ~ 7324451 (+) True AMCG00000215
TU187384 lncRNA downstream 387214 7683878 ~ 7684097 (+) True G148919
TU187435 lncRNA downstream 462705 7759369 ~ 7759597 (+) True G148961
TU187484 lncRNA downstream 659308 7955972 ~ 7956389 (+) True G149001
TU187549 lncRNA downstream 1276272 8572936 ~ 8575124 (+) True AMCG00000251
AMCG00000213 mRNA upstream 1266 7273443 ~ 7289400 (+) True AMCG00000213
AMCG00000228 mRNA upstream 32514 7256343 ~ 7258152 (+) True AMCG00000228
AMCG00000227 mRNA upstream 152089 7127565 ~ 7138577 (+) True AMCG00000227
AMCG00000197 mRNA upstream 329384 6957434 ~ 6961282 (+) True AMCG00000197
AMCG00000195 mRNA upstream 344403 6941617 ~ 6946263 (+) True AMCG00000195
AMCG00000215 mRNA downstream 17208 7313872 ~ 7324374 (+) False AMCG00000215
AMCG00000214 mRNA downstream 54136 7350800 ~ 7359036 (+) True AMCG00000214
AMCG00000217 mRNA downstream 64579 7361243 ~ 7362416 (+) False AMCG00000217
AMCG00000211 mRNA downstream 138621 7435285 ~ 7460803 (+) True AMCG00000211
AMCG00000234 mRNA downstream 257424 7554088 ~ 7568593 (+) True AMCG00000234
TU187079 other upstream 769844 6516507 ~ 6520822 (+) False AMCG00000198
TU187068 other upstream 816434 6471431 ~ 6474232 (+) True AMCG00000201
TU186901 other upstream 1402639 5881023 ~ 5888027 (+) True AMCG00000166
TU186772 other upstream 1854904 5435158 ~ 5435762 (+) False AMCG00000142
TU186262 other upstream 3530042 3760179 ~ 3760624 (+) True G148040
TU187300 other downstream 62614 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other downstream 64356 7361020 ~ 7362707 (+) True AMCG00000217
TU187550 other downstream 1283053 8579717 ~ 8581112 (+) False AMCG00000249
TU188032 other downstream 2672660 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 3237926 10534590 ~ 10535137 (+) True G149525

Expression Profile