RNA id: TU189793


Basic Information

Item Value
RNA id TU189793
length 257
lncRNA type inter_gene
GC content 0.62
exon number 2
gene id G150811
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17545454 ~ 17548508 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCTTCAACTTGGCCATCATCTCCACCGTCTTTGTCCTTGTCCTCCTCCTCGTCTTCGTCGTActcgtcctcctcttcctcgtcctcCTCAGAGGACGTGTCTCCTGCGCCATCCACCTGGAGCATCATgggaggctgctgctgctgctgctgctgctgctgctgctgctgttgctgctgctgctgctgcacctgcACCGCTCCCTGCCCTGCCTGTGCAGCCATGGCCGCTTGCAAGACCTGCAACGGCACCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189742 lncRNA upstream 46357 17196477 ~ 17501853 (+) True G150767
TU189674 lncRNA upstream 736227 16811453 ~ 16811983 (+) False AMCG00000514
TU189639 lncRNA upstream 825583 16681915 ~ 16722627 (+) True G150689
TU189636 lncRNA upstream 898636 16647905 ~ 16649574 (+) True G150687
TU189633 lncRNA upstream 898636 16648065 ~ 16649574 (+) False G150687
TU189824 lncRNA downstream 107068 17655576 ~ 17702341 (+) True G150831
TU189855 lncRNA downstream 210005 17758513 ~ 17759502 (+) False AMCG00000525
TU189893 lncRNA downstream 320790 17869298 ~ 17870290 (+) True G150877
TU189913 lncRNA downstream 401426 17949934 ~ 17968712 (+) False G150886
TU189912 lncRNA downstream 419244 17967752 ~ 17971252 (+) True G150886
AMCG00000530 mRNA upstream 8801 17529717 ~ 17539409 (+) True AMCG00000530
AMCG00000506 mRNA upstream 117713 17427522 ~ 17430497 (+) True AMCG00000506
AMCG00000507 mRNA upstream 147863 17377382 ~ 17400347 (+) True AMCG00000507
AMCG00000505 mRNA upstream 192387 17340772 ~ 17355823 (+) True AMCG00000505
AMCG00000509 mRNA upstream 294585 17211968 ~ 17253625 (+) True AMCG00000509
AMCG00000526 mRNA downstream 171141 17719649 ~ 17748022 (+) True AMCG00000526
AMCG00000525 mRNA downstream 200002 17748510 ~ 17759582 (+) True AMCG00000525
AMCG00000527 mRNA downstream 212195 17760703 ~ 17768088 (+) True AMCG00000527
AMCG00000520 mRNA downstream 246840 17795348 ~ 17800754 (+) True AMCG00000520
AMCG00000542 mRNA downstream 335321 17883829 ~ 17938428 (+) True AMCG00000542
TU189714 other upstream 609928 16935993 ~ 16938282 (+) True G150750
TU189044 other upstream 3394370 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 3855621 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 4820307 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 5562495 11982460 ~ 11985715 (+) False AMCG00000352
TU190029 other downstream 605356 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 868672 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 993869 18542377 ~ 18565627 (+) True AMCG00000572
TU190785 other downstream 2420831 19969339 ~ 19972015 (+) True G151522
TU190974 other downstream 3293430 20841938 ~ 20843463 (+) True G151676

Expression Profile