RNA id: AMCG00003729


Basic Information

Item Value
RNA id AMCG00003729
length 7463
RNA type mRNA
GC content 0.56
exon number 36
gene id AMCG00003729
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16547072 ~ 16569703 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGTAGTAGGTGGCGAATTGGGAAGAGTCGACACAAATCCGGGGGATAGCtcgtgttatttatttattagtcgcctaaattgtttttagtttagtcGTTTCCCCCCCTAAACACAAAGGATACCGAAGCTGCTGTTGGAGAGCGGATTATGACAGGGGAGGACTCGCAACAAGAGACACATTGagccctgttttttttctttacgaCAGTCTGCACAGAGTAAGCATGCGTGACCTTGCCGCCCAGGTAACCAGCAGTTTGCTACGCTTTCCAGAGGTAACCGTAGACGCACTTGGGGAAGATGAAATTAAACTGGACTCTGTGCTGCTCGGGAAGTTTGCTACAGGCAGGAACGGACTGGCATGGCTGGCCTGTGGGCCTCAGCTGGAGGTGGTGAGCAGCACCACGGGGGAGAGGCTCTCCGCCTATCACTTCAGTGGCGTGGGAGAGAACCCCCCCAACGTCCTGGCGGCCCGGGAGTTCTCCTGGCTGAAGAGGAGCGGCCTGCTGGTGGGGCTTGAGGAGGCGGAGGGCAGCATGCTGTGCCTGTACGACCTGGGCATCTCCAGGGTGGTGAAGGCTGTAGTCGTACCAGGAAGGatAACTGCGATCGAGCCGTTGATCAGTTATGGAGGAGCGAGCGCCAGCACCCAGCACTTGCACCAGAGCCTGCGCTGGTTCTTTGGCATCGCTGCAGTGGTGACAGACGTGGGTCACGTCCTGCTGATTGATCTGTGTTTGGATGACTTATCGTGCAGTCAGAGTGAGCTAGAAGCCTCAGATCTTCAGGTGATCAACAACTCTCCGACAGAGATCCCTCGTCTCCGGGAGAGCGTGACCAGCCAGGGGCGGCACCTGTGTCTGCAGATCCATTTCCCCAGAGGAACCAGCGCCACGGCTCTTCAGTTCATCCCCAGGACCAACCAGCTGGCGGTGGGCTTCTCCGACGGGTACCTGCAGCTTTGGAACATGAAGACACTGAAAAAAGAGTACCACTCACAGTTGGAGGGAGGCCGGGTGCCCGTCTATGCCTTTACCTTCCAGGAGCCAGAGAACGACCCCCGCAACTGCTGCTACCTCTGGGCCGTGCAGTCCTCACAGGACAGCGAGGGAGACGTGGTCAGTCTGCACCTGCTGCAGTTGGCGTTCGGGGAGAGGAAGTGTTTGGCGTCTGGGAAGATCCTATATGAGGGTCTGGAGTACTGCGAGGAGCGCTACAGTCAGGACCTGAATGGGGAAGCATTCGCGCTGCGGACCCAGGCCACCAGCACGCGGCTGCTGGGCTGCCAGACCATCGAGAAGTTCAGGAATCACCCGGACAGAGACGACAGCATGAACGAAGTTGCCTCCCCTGATACCAGCGTGTCCATTTTCAGTTGGCAAGTGAAGTCATACGGGCAGGGAAAGCCTTCAACCTACGTGGGCGTCTTTGATATTAACCGATGGTACCACGCACAGATGCCAGACTCCTTAAGAATGGGTGAGTTTCTGCACAGCTGCTCCTACTTCGCCCTGTGGTCGCTGGACTCTGTGGTGGCGATGACCTCCCCCTGTCCGCTGCTGGACGTCTTGGTCCACGAGCGCAGTTTGAGTAGGGGGCTGCCGCCCACCTGTCCGCCTCCAGAGCAGTTCTTTAACCCCACCACCTACAACTTCGATGCAACCTGCCTGCTGAACTCAGGCATTGTTCACTTGACATGTTCTGGCTACCAGAAAGAgACATTGAGCTTCTTAAAGAAGTCCGGTCCCTCCTTAAGTGAGGTGATTCCTGATGGCTACAACCGCTGTCTGATGTCGGGGCTACTGTCGTCTCGGCTCACAGACGTCCAGCCTTCCAGCCTCACGCAGGAGGAGCAGCTGGAGGCCATATTGTCCACTGCTGTAGAAACAAGTACATTAGGGCTCATTACGGGATGCATCCGGCAGTGGACTTCAGAAGAGCAACCTCGATCTGCAGCAAACCTGCGCTTCATACTGGAGTGGGCCTGGAGCAAAGTGGTCCTCACTAAAGAGGAGCTCGACAGAATCTGTGCCCCACTCTTTGACAGTTCCTGTAACTTCATTGATCCACAGACACTTCAGCTCCTGCAACACTGCCAGCTGCTCCTTAGCAACCTCAGCACCATCTTAAACTGCTTTCTCAGTGAGGCACAAGAGCTCACAGAAAAGGGGCTGGTGGGCTTGGTAAATAAGAATGTGGTGTCCAGCCTGATCTCACAGTATGCGCGGGTGGTGCTGTGGTTTTGTCGCTCTGGTCTTTTGCCTGAAGGTTCAGaTGAAAATGTTCTTCAGATATCAAGGCCGTTTTACAACTACCCCATCATCCAGAACTATTACACAAGTCGCCGGGAGAAACTGGAGCGCCTCTCGAGAGGTAAATGGTGCGCTGACTGCCTGTTGATTGACGGGCTGGTGTCTCAGTGTGGAGATCGGATTGCAAATCTGTGGAAGAGGGACGAAGGGGGGACAGGACAATACCCACCCCCGACTTTACATgcTTTACTTGACATTTTTCTCCTGGACACTGTTGAAGAAACCTCGAAGCATGCCATTGTAATCTATTTGCTCTTGGACGTCATGTATTCTTTTCCCAACAAAAGCGAGTCGTCCGTGGAGTCCTTCCCCACCGCCTTTGCCATCCCGGTGGGCTTGGTGAAGCTCGTGCAGGGTTTCTGGCTGCTGGATCACAATGACCACGAGAACTCCCTGGACCTTCTCCTGCACCCGGCCACCAGCCGTGCCATGCTGAGTTGGCAGCACGCCCGCGTCATCCAGGCCCTGATGTGCCAGGGGGAGCACCGGCGCGCCCTCCGCTACATCCAGATGATGAAGCCAGCCACGTCGTCCAGCAGCGAGATCAAGCTCTACCTCACAGTGCTGCTCCACAACAGGTGCATGGTGGAAGCCTGGGCCTTGCTGCGGCAGCACTCGAACAAGCTGAATGTGGAGGAGCTGCTGCGCTGCATGTACGAGATGTGCCAGAGCATGGGCCTAATGGAGGAGCTGCTGAAGCTGCCCCTCGCGCTGCCTGAGCAGGAATGTCTGGAGAAGTTCCTGCAGAGCAGCGCTGGCCTTCAAAACCAGGAGTTTCTGATGGTGCACTATCTACAGCAGGCCAACTACGTGCCTGCATTGCAGCTCAATCAGGCCCTGAAGATGAACTTGGTTAATGACCGCGATCCCAAAATCAAGGAGAGAACAAATGCCAGAAACTCGATACTTGACCAGTATGGGAAAGTTCTCCCTAGAGTCCAGCGAAGACTGGCCACAGAGCGGGCAAAACCATACCAGCTCCCGTCCACGATTCTGCGGGAAGTGGCCAGGCCCCAGCCCCTGTCCACCGTGGCAAAACCAGCGCCTGCAGGCAACGTGCTCACCAGAGCAAGCTTCATCAACAACGTGCTTTCCAAAATCGGTGAGGTGTGGTTGGGGAAAACAGTCACGCCCGAGCCTTCTCCTCTGAAAAGCCTAAGAGTTCCTGAATTGCCTTCTTTTACCCCCCGTCGGCAGTCCGTGGAGCTTCCCGATGCCTTTGTGGGAACACCTATTACTAGGACCTCAAAGACCATCTCCAGAATTCTCGATTTAGTTGTCCGCCCAACCACAGAGAAGATGCCCGAGGCATTCAGCTTCCAGCAGACCCCCCCGAAGCAGGGCCGCTCGTGGCCTGCATCCAGCCCCCTTCAGACCTCTGCCGTTAAGGCCAGCGGCCTCAAAAACATCTCCAAGGCTTCAGAGTTGTGCCTGCTGCAGACGCCGCAAGTAGTGAAGAGAGCGCGGGCCCTGACCTCCACCGGCCCCAGCTTCCCGGGCTTCACTCCGCAGTCCATCCTGAGGACGAGCCAGCGGCCGACACCTGTAGGctccccctctgcctctcctGGCCACTCCCTAACCCCGCCGCTGCGAGTGAAGGAGAGCCGCATCACCTTCATAGAGGAGCGCACCCCGAAGACCAGCAGGTGGAGCAACGGGATTGCTGCAGACAGAGAAATTAACTTCCTGTCGACGGCATCGCCCACACTGAAGTCCCAACCTCCCGGCTCCTGGGCGGTCCCTGCTGCGGTGgaggacgaggaagaggagaaagaaaTGGTAGAAGAAGGAGGTATGGCCATGGAGGGAAGCCGACCTCACGAAACCAGCCAAGCATCCGCCCGGTCGGCAGACTCCACACTGGAGTTCCATGATGCCCCCACCCCCGAGGAGCTGGAGGAAGAGGTGGTGACGTTGAATCCGAAGCTGGCGGCTCTCGAGCACCCCAGCTCAGCAGTGGTGAAGGCTAGTGAAAGAGTGACGCCCACAGAGATGCAGGAGGAGGTGCtcacagaggaagaggaagaagagcaGCCCATGGAGCAGACAGGTTCGGACATTGTGGAACAGAACACATTCTCTCTGGACATTCTCTCCACGTTGACACGGTCCGGCATTCGAGAAACCTCTGGCGCAGAATTCAGTTTGACTTCATTCACTACAAGTGAAACAGTCTCTCAGGTGACTGAGGAGCCCCTTTGCCCCGCTCTCGCTGAGAGACCTGCGCTAGAGACTCAGACATCGGAGGCTTCTGAACCGGACGCAGTTGACAGCCATTCTGTGGTGAGCGTCGACGACAGCGAAGACTCCTCCAGCACGGAGTCCGAGACCAAACTGGAAGCGTCGGCGGAGCTGGACCCGGACAGCGAAGTGGAGATCCTGGAGGAGGTGTGTGGGAACCCAAGAGAGCAGCGGCCATCCCCGCCCCATCTCTTCCTGGAGGAGCAGCCCATTCCAGAGCTGGAGTACATGGAGGAGCACCCTGCTGCTGTGCTCCCTGTCCTCGCCCACGAGgctgtggaggaggaggaggatttGGAAGTGGAAGCCCTTGAGGAGGAGCCGGTGTCATTCACAGAGCTGCAGCCCTCCGCCCCCCTCCTCATCCCAGTGGAGTTCAGCGAGGAGCCggagttggatggggacctccTGCAGCTAGACCACCCAAATGCCTTCGAGCCCATGGTGGACCACGAAGACCATGCGGCTCCCAGCAACTTCACATTGATGCTGGAGGCCGAGGACGGGGAGAACGGGCTGGCCGACTCGGTTTTGGAGGACGAGCACCTTCTGATCGTGGAGCTGCCTCCCTCTGCCGAGAACCGAACGGGAGACCAGAACGGGGCGAGTGAGCGagttgaggaggaggaggtcaTTAGCCAGGAGGAGATAACCCCGGAAGGTGTTGTGGACAAGGAGCGCCCCGAGCCGGTTCCAGAGACACTCCCATACGTTCCCGAGCCCATTAAAATGGCGATTGCGGAAAACCTGCTTGACGCTATCAAAGACACGAGGTCCAAAGAGTTTGCAGCGGAGCTGCTCGAGAGCTCTGTGCAGCCGGAGGTTCTGGTGACCGGTAGGAAAACCACATCCTTGACAACCACAACGATGACTTCTGAATCAGTCCGGGAAACGATTCACATGGGTTGTGGAGATGCGCTTGTGGAGGAGATGAGACGCACCAGAGGAGCGAGCATGTTGGTGGCCGAAGTGCCAATCTCAAGCGATCAGCCTGAGGCGGAGGAGgtgaagcagcagcaggaggaggcgGCTGTGAAAGATCTTCCGGCTCCAGCTCCTAGTCAGAAAATTGACGAGGAGGAGACATTGCTGGCACAGATGGACTTGCCAGTGCCTACCACTCCCAAAAGGGCTGGCAGGAGAAGGAAAAACACCCTGGACTCCACCTTCCCTGTTACTCCGAGGAGGAGCACACGGAACACCAGAGATGCCGAGTCAGACGAGGCCCTGGAAAACCCGGAGGCCCCaataaactccaaacttcaGACTCCGCAGAAATCGACGCCTCACAAAGGGGGCCGCAGAGCCAAGAATGCCGTCGTCGTCGAGCCCCCTGAAGATGTCCAGGAAAGGGATGGGCTTAATGATCAAGACATCCCGATGCCGGTCACTCCCACCAGGAGACGCGGCCGCCCCAGCGTCCCCTGTGTGTCTGAAAGCGCTCCGATGGTTCCCGATGAAATGGCTCTGGATCAGTCCGAAAAGAAGGTGCCTAGTAGTCCCAGCAGGTTGACCAGGAAATCGGTCACCCTTGAGATACCTCACCTGGCCAAGACTGAGGAGAAGGACACCGAGATTGCTGAGCAGGAGACACTCATTCCCCGGAAAAGAGGTAGGAAACCGAAAAACCTTGTCGCAGCAGAACAAGCCAAAACGGTGCAGAGCGAGCCACCGCGCACCCCTGGCAGAACGACGAGGAGCAGGTTGGCACTTGTGGTGGAGGTGCCCGAGAAGGAGCTCCCTCCACTTCCTGAAATCCTCCCACAGGACGAGCCAGGGCTGCCAGTGGCCGAGGATGCGTTGAAGAACAGACTGGAGGAGGAAAccagaggagaaggagaagaagcgATGGCACTGCTGGTCGAAGGTGAAGTGTCCATCAGGGATAACTTCCAAGACGATACTGGCGCTGACCAGAGACTCTCGGAGGCCACGGACAACACTCGGGGCCCCTCCTCTCCTACTGCCGGGCCCAGCGATGAACCCCCAACAGAGACGGAGGTCACAGAAGCAGCTGCAGGGACGGCCAAGGACGCGCCGAAATCACGCAAACCAGGCAGACGGGCGCGCCCAAGCAGACTTCCTCCCCCCGCCAAGGAATCCTTCATCTTCTCTCCTCCTCGGACACGGTCCAAAAAAACTAGAGCCAAAAAGTCGCCCGACTCTCCCGAGGCCCCTCCAGACTCCCAGCCGCAGTTTGTGTTTTCTCCTCCCACCACGCGGACCAGGCGGAAAATGGGACAGGAAATATCACGGAATATCACGGAAGACATGGAGCAGCAAGAGGTGCAGGATGAAGTCCCGAAGGTTTCTGAGGAGACGGACACTCGTGCtgcaaaaccaagaaaaaagCGAGCAGCCAGGGCCCCGAAAAAGGCGGTCTGGTCTCCCCCGCCGGTGGAAGTCAACCTGATCTCGCCCATGCCCAGCCCCGAGGAGCTCCCCAGGGGCAGGAGGAAGAAGCCTGAGGAGGCCGAATCCCCGCTGCAAAGGATGAACCTCCGCAGGAACCGAAAGAGACTGATGGACACCATTTTCCCAAAGCCTGTGACTCGCAGGAAGATGCTCTGATGtggtggatttgtttttttgttttttcctgaattttaataaatttgactgctgtttttttttcttctctatttaAGTGAAGTACCACCAGTTGGAactgttttgaattaattaacaaatctAAATTgggagaaaaataattttatataaattattgtacAATGACTTGAAAAAGCTGTATGTGCTGAGGTTGGTGTGGAGGAGGAGCTAATCTCCCAAATTGTGAGGGGaggattattttataaaacttcATTTATATAAGACATGatgcaaatgtaaatatcttttaggaatgttataaataaaaatacacttgcgaagttttctattaata

Function

GO: NA

KEGG:

id description
K25129 AHCTF1, ELYS; protein ELYS

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3409 lncRNA upstream 116517 16429034 ~ 16430555 (+) True G2797
TU3352 lncRNA upstream 315574 16229935 ~ 16231498 (+) True G2755
TU3309 lncRNA upstream 461080 16085140 ~ 16085992 (+) True G2721
TU3303 lncRNA upstream 462206 16081182 ~ 16084866 (+) True G2719
TU3280 lncRNA upstream 514137 16032708 ~ 16032935 (+) True G2698
TU3454 lncRNA downstream 23561 16593264 ~ 16597369 (+) True G2833
TU3458 lncRNA downstream 29355 16599058 ~ 16599329 (+) True G2836
TU3493 lncRNA downstream 298596 16868299 ~ 16934020 (+) True G2861
TU3513 lncRNA downstream 471410 17041113 ~ 17042564 (+) False AMCG00003744
TU3591 lncRNA downstream 638332 17208035 ~ 17210041 (+) True G2945
AMCG00003730 mRNA upstream 24486 16518106 ~ 16522586 (+) True AMCG00003730
AMCG00003727 mRNA upstream 119364 16415450 ~ 16427708 (+) True AMCG00003727
AMCG00003719 mRNA upstream 258370 16287662 ~ 16288702 (+) True AMCG00003719
AMCG00003720 mRNA upstream 281374 16258454 ~ 16265698 (+) True AMCG00003720
AMCG00003718 mRNA upstream 336795 16207847 ~ 16210277 (+) True AMCG00003718
AMCG00003733 mRNA downstream 6685 16576388 ~ 16589499 (+) True AMCG00003733
AMCG00003737 mRNA downstream 82131 16651834 ~ 16660947 (+) True AMCG00003737
AMCG00003738 mRNA downstream 123867 16693570 ~ 16699348 (+) True AMCG00003738
AMCG00003739 mRNA downstream 278091 16847794 ~ 16850839 (+) True AMCG00003739
AMCG00003743 mRNA downstream 302940 16872643 ~ 16877245 (+) True AMCG00003743
TU3283 other upstream 507432 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 2127340 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 3390445 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 3504475 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 4969743 11573731 ~ 11577329 (+) True G1989
TU3719 other downstream 1112114 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 1568052 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 1576957 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 2798490 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 4979498 21549201 ~ 21549533 (+) True G3751

Expression Profile