RNA id: AMCG00004101


Basic Information

Item Value
RNA id AMCG00004101
length 2696
RNA type mRNA
GC content 0.46
exon number 21
gene id AMCG00004101
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33137636 ~ 33142538 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGCAATAGCGGCGAGCTTTGACTTTGGCTTCAAGGATGGCGTTTTGCCTGAGACTCGGCGTCGCATTGATAATGCTGTTATCAGAAGTTCGGATGCAAAGCCCAGGCACCATGAATACCACATGCTTAGGGAATTTAATGATCATGGATGTGGATTCCTCTCTTACTTGGGGAAACCACTTCATCTTTAATGTAATGGACCCAACTGGGAAGTTCATCCCACTGACCCCAGCACTTGCCACTCAGTGTGGATATAGCATTAGTGTTGATCACTGGGGAAATGTGAAGTTCATTGCGTCTGTGCTCAGCTGTTTTGCCGAAAACAATGCAAGTCTTTTCCCTCCCTTCTCcattggacttttttttttttctcccctgGTCTCTGTCCGACGTGGGGTCCCTCTTATTGAACCCAACTTTGTTCAGGATGCACCTGAGGACTGGTCTCTAGCTTTCCCTGAGGCAACTACTGCTGAAAATGATATCTGGCAGATTGTATTTCACCTCCCTAAGGAGAAGGCCATGACTGTCCATCAAGCGATGAGTGAAGGTTATGGTGTAAACACCACCTATTCCAGAATTGTGCTCCGAACCCCCTACAATACTTCAGAAAGCCAATCCCAACTGATCCAAGGTGTGCCTCTGTCTGTAGTCCGTTCAACCACTTTCTACAAGCAGAGATGGATGATCTTGATGGTTGATACTGCAGTGGCGTGCCCTATTGATGGCACCACCTTCACTGAAGAGATGATAACCTGGGCTGTTCCTCAGATTATAACTCCCCTTGTTCCAACCCTGCCAATATCAAATGTTGATGTCCAGTTGGGAGTTAATAATGAGATTCTTCTCCCTTCAACCATTATTGCCAGAAACTACAATCTTACTGTGGGTCCTAATGTGGTAATCGTTCAGTTTCCAGTGGGTGCTACTGGAGGCTACtataagAGTCATGTTATTCCTGATTCTGCACATGGAATATATGGCATAACTTACACCATTGATCCGTTCTTGGTCTACTCCTGGGAGGATGATACCTATGACAAGACAAAGTACACCCTCCTTCATCCCATTACTACACCGTTCATGCCAAGACCCCCACATGTTAACTACACTGTTCCAGATAATCAACGGTTCAATGTAACTCTGGGGACCTTCCTGCCTGATGTGGAGCTGGTGCAGATTACCTTTGTGACGGGAACCCTGACTATACCCTATATGGTTAACCTTTGGCACAATGTTCAAGAGCACATATTTCCAAATGGCTCAAAGGCTTACAATCTGCAAGTGCCCCTTGTTGACCcaaatgttgttgttgagGTCACTTCTCCTACTACTAGAAGATATACCCTGCCTCTGCTTTACCAGCTTGTAGTGTTACCAGAAAATGACACCTTTACACATCCAGCTCAGCCTGAAATCACCCTTCAGGATATTGTCCCACCTACTGTCACTGGATACTGTGACCTGGCCAACTTCTATGTTAATGCTACAAATGGGAACCTTGGCAAGAACTGGCTGCTTGTTGTGGGTACTAGAACTCTCACCCCTGCCATGGAAACTGAATACACATATCAGGAAACTGCCACCAGTGTCTTGATGACTGTACCATATAACTCTCCTGATGTTGTCTATGAACTGGTCAGCTCTTCAGAAATCCGTAGCAGACTTGACTTGGCTCTGAAGGACAGTGCAAAGCTGTGGATCTACACTAACTTCTCAATCTCCTGCAGCTTTCCCCTGAAAATGATTGAGTGCTACACTAATGGGACTATGACTGCTCTGGCTGTGAAGGTGGAGTCTGTACCTAGCCTGAATCCTTCCCAGCTAACTCTGAGGGATCCAAGCTGTAAGCCATCCCTGTCTACTGATGGCACTGCATTCTTCCATTTCAATGTTAACACCTGTCAAACTACCAGAAAGTTTGCCAGCAACATTATGACTTATGAAAATGAAGTACAGTGGACATCCCCTACCATCACCTACAGATTTGCCATTGCGTGTCACTACTACATTAATGACACTGAAGTGGTGTCCTTGGAACCAATGGACAATCCAGCACCAGTTGTGGAGCCAGTCTTGGGCATGATTACTGTGGTCATCAAGCTTGCCTTGGATGTCTCCTATAACAGCTTCTATGGATCCTCTGATTACCCAGTAGTAAAGTACCTGCAGGAACCATTGTATTTTGAGGTGGAACTCCTGAATCGCCAGGATCCTCAAGTTGAGTTGTTTCTGGAAAATTGCTGGGCTACTGCTTCAACTGACCGGGACCGCTCTCCACAGTGGGATATCATTATAGATAGTTGTGAGAACACTGAAGACTTGTACAAAACCATCTTCCACCCTGTTACTGCCAACCAAAGGGTCCTCTTCCCCTCCCACCTGAAGAGATTTGAAGTGAAAATGTTCACCTTCACCAATGAGCAAACTGTACTGGAAACTCCAATTTATGTCCACTGTGGTGTTGTGATCTGTGATGCTAACCAGCCATCTGATGGGGTGTGCAGAGGGCAGTGCATTCCTGGCAAGCAGAGATTTGGCCGCAGTGCAGACCGGAAAAACAGGGTGGTTGTATCTTCTGGTCCAATTGATGTTGGTGCAGGTTCTCATTCCTAAGGTTTCTGATCCCTTTTTCTGGCTGCTATTGGCATTCTTGACTGTATGAACATGTAAAGAATAAATCTTTAAACCCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6819 lncRNA upstream 525585 32611833 ~ 32612051 (+) True G5569
TU6774 lncRNA upstream 735253 32400405 ~ 32402383 (+) True AMCG00004079
TU6773 lncRNA upstream 750101 32384435 ~ 32387535 (+) True G5529
TU6771 lncRNA upstream 753957 32383409 ~ 32383679 (+) True G5527
TU6760 lncRNA upstream 787533 32348390 ~ 32350103 (+) True G5522
TU6947 lncRNA downstream 295790 33438328 ~ 33445420 (+) True G5662
TU6968 lncRNA downstream 330498 33473036 ~ 33473330 (+) True G5680
TU6969 lncRNA downstream 332304 33474842 ~ 33475047 (+) True G5681
TU6976 lncRNA downstream 423635 33566173 ~ 33567479 (+) True G5688
TU6999 lncRNA downstream 455354 33597892 ~ 33600011 (+) True G5707
AMCG00004099 mRNA upstream 2145 33132355 ~ 33135491 (+) True AMCG00004099
AMCG00004092 mRNA upstream 190720 32937405 ~ 32946916 (+) True AMCG00004092
AMCG00004093 mRNA upstream 236966 32876810 ~ 32900670 (+) True AMCG00004093
AMCG00004088 mRNA upstream 292986 32838964 ~ 32844650 (+) True AMCG00004088
AMCG00004089 mRNA upstream 300955 32814743 ~ 32836681 (+) True AMCG00004089
AMCG00004100 mRNA downstream 98494 33241032 ~ 33247564 (+) True AMCG00004100
AMCG00004108 mRNA downstream 293212 33435750 ~ 33452672 (+) True AMCG00004108
AMCG00004109 mRNA downstream 418486 33561024 ~ 33565863 (+) True AMCG00004109
AMCG00004110 mRNA downstream 605371 33747909 ~ 33761457 (+) True AMCG00004110
AMCG00004113 mRNA downstream 624508 33767046 ~ 33767636 (+) True AMCG00004113
TU6919 other upstream 6450 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 2242809 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 2866112 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 5034425 28062363 ~ 28103211 (+) True G4831
TU7209 other downstream 1710325 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 2609995 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 3129654 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 3631463 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 3719009 36861547 ~ 36891746 (+) True G6328

Expression Profile