RNA id: AMCG00004108


Basic Information

Item Value
RNA id AMCG00004108
length 2848
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00004108
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33435750 ~ 33452672 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTATTGCAGCCGCTACAATGTTCACTCCTGATAAAGAAATCCAGCTCTGTGACCACCAGTTGCGTGTGGCCTTCGACGGTGATGCAGTTCTGTTCTCTGATGAGTCAGAGATCATAGTAAAGGAGCACGGCCTGGATTCTTTCTTTGAACACGAGAAAGCCTTCGAGAACAAGCCCCTTGCACAGCCCAAACCCCAGCATGCTGTTACTATCGCAGTGTCCTCCCGAACATTATTCAATATGGACAAAGAAAGGAAACTGTACGAAGAAGAGGGGGTAGAGAAATACGTGCAATACCAAGAGCAGCACGAAGATGAGCCGCTGATGCCGGGAGCGTCGCTGCCGTTTGTGAAGgcCTTAATGACTGTTAATGCCCGTCTGCGGGAACTGTACCCGGACAGTGAAGAGTTGTTTGATATTGTTCTGATGACTAACAACCACGCCCAGGTTGGGGTTCGCCTCATTAACAGCATCAATCATTACGGTTTAACAATTGAAAGATTCTGTATGACTGGTGGAAAAAGCCCTATTGGATATCTGAAGGCCTACCTTACCAACCTCTACCTCTCTAAGGACTCTGAAAAAGTGAAGGAGGCGATTGAAGAAGGTATTGCAGCCGCTACAATGTTCACTCCTGATAAAGAAATCCAGCTCTGTGACCACCAGTTGCGTGTGGCCTTCGACGGTGATGCAGTTCTGTTCTCTGATGAGTCAGAGATCATAGTAAAGGAGCACGGCCTGGATTCTTTCTTTGAACACGAGAAAGCCTTCGAGAACAAGCCCCTTGCACAGGGGCCTCTGAAGTGCTTTTTAGAGGCACTGGGAAAACTGCAGCGAAAGTTTTACGCCAAGAACGAGCGGATGAACTGCCCCATCCGCACCTACCTGGTAACCGCCCGAAGTGCTGCCAGCTCTGGGGCTCGAGTGCTGAAGACCCTGAGGAGCTGGGGCCTGGAGATCGACGAGGCCCTCTTCCTTGCCGGGGCACCGAAAGGCCCACTGCTGCATAAAATCCGCCCCCACATCTTCTTCGATGACCAGATGTTCCATGTTGAGGGTGCCCAGGAATTGGGCACCATTGCTGCACACGTGCCTTATGGAGTAGGACAGAAGTACCACAAGAGCAAACTCATAGAGCCGACCCCCAAAAATGCGAGGTCCTCCGTCTGGATGTCAGCAGCGGTGGTGCTGGCCGCTGTTTTCGGCGGAGGGGTGCTACTCTTCGCTCGCCGGTTCTTCTCCAGGCGGTCCGCTGTCCAAACACTACGTTATTCGACTGGGATGATGCGGGGGAAGACTATAATCGTGACCGGGGCCAACAGCGGCCTCGGCAAGGCCACAGCCGCGGAGCTGGTTAAGCTGCAGGCCCGTGTTATCCTGGCCTGTCGAGACCAGCAGAGGGCCGAAGCGGCGGCGCAGGAGATCCGCGACGAGGCCGGCCCGGAGCAGGGAGAGCTGGTAATCAAGCAGCTAGACCTCGCATCATTGAAGTCAGTGCACAACTTCTGTGAGGAGATCATCAAGGAAGAGCCGAGGTTAGATGTCCTCATCAACAATGCTGGAGTGTACCAGTGTCCATACACCAAAACCGAGGATGGCTTTGAGATGCAGTTTGGCGTCAACCATCTGGGCCATTTTCTTCTCACACACCTCCTCCTGGATCTGCTGAAGAAGTCTGCCCCCAGCCGGATTGTCGTGGTGTCCTCCAAGCTCTACAAATATGGAGAAATTAACTTTGATGACTTGAGCAGTGAGCAGAATTATAATAAAAGCTTTGCTTATAGCAGGAGTAAGCTTGCCAACTTGCTCTTCACCCATGAACTGGCTAAACGCTTGGAAGAAACAGGAGTGACTGTAAATTCTTTAACCCCAGGAATAGTTCGAACAAATCTGGGGAGGCACATTAACATTCCTCTTCTTGCCAAGCCTGTGTTCAATCTAGTGTCTTGGGCTTTCTTTAAAACCCCCTTGGAAGGTGCGCAGTCCTCCATTTACTTAGCCTGTTCTCCAGATGTAGAGGGGGTGTCCGGGAAGTGCTTTGCCAATTGCAAGGAGGAGGAATTGCTGTCGAAGGCAACTGATGATGCAGTCGCAAAAAAGTTGTGGGACATTAGTGAAGTGATGGTGCAACTGACAAAgtaaagcagaaaaacaatctTTAAGAGGTAATTCTTTACTACTGTAGTTAATCAAGTCAAGGCGATTAAAGTTATATTTCAGTGAagtatatagaaaataaagaaaatctacaGGATTATCCATAAACTCTATTGCAGTAAAGTGTACGATATACTTCGCAGCTTCAAGTAATGTTGAACAAAGATATACAGAAAAGCTGTTCTTTTTGAATTTGCCTACATCACTTAACACTTGGTGTATAGTTTCTTAAAGATGGTCATGTTCATTGATTTGACTGTCCACTGCAGATCCTGCTGCATGCCCTTTGTACACTATAAATGTGGGTTTTAGAGAAGTGAAATggaatatttacaaaacaattgtcCACACtggtaattacattttaacgcagtgtattttttttattatttttttcaaatataataaatgtatttctttgcagatgcccttatccgaGGTGACTTACCGGTTACATGAGCATTTAATTTGATAAGCAAGGATACATTTAGTTtggatttgaaatggaaatgtgtaGTGTTGCTTTCAtatagtttttaatgcactgccTTATTCTATGCTTTGCTGAAATGATTAGATTGAGTCTAGTGAtctattaaaattgattttgaaatgtttgttttatatattttttaatttgtatttgtgggaggggaggggtgctattacaaaaaaaaaatcacatgtgAAAC

Function

GO:

id name namespace
GO:0009117 nucleotide metabolic process biological_process
GO:0016311 dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008253 5'-nucleotidase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01081 E3.1.3.5; 5'-nucleotidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6819 lncRNA upstream 823699 32611833 ~ 32612051 (+) True G5569
TU6774 lncRNA upstream 1033367 32400405 ~ 32402383 (+) True AMCG00004079
TU6773 lncRNA upstream 1048215 32384435 ~ 32387535 (+) True G5529
TU6771 lncRNA upstream 1052071 32383409 ~ 32383679 (+) True G5527
TU6760 lncRNA upstream 1085647 32348390 ~ 32350103 (+) True G5522
TU6968 lncRNA downstream 20364 33473036 ~ 33473330 (+) True G5680
TU6969 lncRNA downstream 22170 33474842 ~ 33475047 (+) True G5681
TU6976 lncRNA downstream 113501 33566173 ~ 33567479 (+) True G5688
TU6999 lncRNA downstream 145220 33597892 ~ 33600011 (+) True G5707
TU7014 lncRNA downstream 173695 33626367 ~ 33627507 (+) True G5720
AMCG00004100 mRNA upstream 188186 33241032 ~ 33247564 (+) True AMCG00004100
AMCG00004101 mRNA upstream 293212 33137636 ~ 33142538 (+) True AMCG00004101
AMCG00004099 mRNA upstream 300259 33132355 ~ 33135491 (+) True AMCG00004099
AMCG00004092 mRNA upstream 488834 32937405 ~ 32946916 (+) True AMCG00004092
AMCG00004093 mRNA upstream 535080 32876810 ~ 32900670 (+) True AMCG00004093
AMCG00004109 mRNA downstream 108352 33561024 ~ 33565863 (+) True AMCG00004109
AMCG00004110 mRNA downstream 295237 33747909 ~ 33761457 (+) True AMCG00004110
AMCG00004113 mRNA downstream 314374 33767046 ~ 33767636 (+) True AMCG00004113
AMCG00004115 mRNA downstream 452619 33905291 ~ 33912885 (+) True AMCG00004115
AMCG00004121 mRNA downstream 666899 34119571 ~ 34130023 (+) True AMCG00004121
TU6919 other upstream 304564 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 2540923 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 3164226 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 5332539 28062363 ~ 28103211 (+) True G4831
TU7209 other downstream 1400191 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 2299861 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 2819520 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 3321329 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 3408875 36861547 ~ 36891746 (+) True G6328

Expression Profile