Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00004122 |
| length | 652 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 3 |
| gene id | AMCG00004122 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 34131126 ~ 34133612 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0035335 | peptidyl-tyrosine dephosphorylation | biological_process |
| GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | molecular_function |
| GO:0004725 | protein tyrosine phosphatase activity | molecular_function |
| id | description |
|---|---|
| K14165 | K14165; atypical dual specificity phosphatase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU7123 | lncRNA | upstream | 41004 | 34081826 ~ 34090122 (+) | True | G5788 |
| TU7121 | lncRNA | upstream | 50341 | 34078351 ~ 34080785 (+) | True | G5787 |
| TU7098 | lncRNA | upstream | 237983 | 33892474 ~ 33893143 (+) | True | G5768 |
| TU7059 | lncRNA | upstream | 359278 | 33769589 ~ 33771848 (+) | True | G5750 |
| TU7032 | lncRNA | upstream | 362312 | 33685727 ~ 33768814 (+) | True | G5731 |
| TU7144 | lncRNA | downstream | 158659 | 34292271 ~ 34292501 (+) | True | G5804 |
| TU7148 | lncRNA | downstream | 248256 | 34381868 ~ 34382099 (+) | True | G5808 |
| TU7220 | lncRNA | downstream | 760490 | 34894102 ~ 34895661 (+) | True | G5867 |
| TU7229 | lncRNA | downstream | 766024 | 34899636 ~ 35350027 (+) | True | G5875 |
| TU7270 | lncRNA | downstream | 1167491 | 35301103 ~ 35306949 (+) | True | G5914 |
| AMCG00004121 | mRNA | upstream | 1103 | 34119571 ~ 34130023 (+) | True | AMCG00004121 |
| AMCG00004115 | mRNA | upstream | 218241 | 33905291 ~ 33912885 (+) | True | AMCG00004115 |
| AMCG00004113 | mRNA | upstream | 363490 | 33767046 ~ 33767636 (+) | True | AMCG00004113 |
| AMCG00004110 | mRNA | upstream | 369669 | 33747909 ~ 33761457 (+) | True | AMCG00004110 |
| AMCG00004109 | mRNA | upstream | 565263 | 33561024 ~ 33565863 (+) | True | AMCG00004109 |
| AMCG00004125 | mRNA | downstream | 497609 | 34631221 ~ 34638669 (+) | True | AMCG00004125 |
| AMCG00004124 | mRNA | downstream | 532780 | 34666392 ~ 34685790 (+) | True | AMCG00004124 |
| AMCG00004126 | mRNA | downstream | 561791 | 34695403 ~ 34724610 (+) | True | AMCG00004126 |
| AMCG00004127 | mRNA | downstream | 664777 | 34798389 ~ 34808422 (+) | True | AMCG00004127 |
| AMCG00004128 | mRNA | downstream | 686556 | 34820168 ~ 34834115 (+) | True | AMCG00004128 |
| TU6919 | other | upstream | 999940 | 33130120 ~ 33131186 (+) | True | G5642 |
| TU6554 | other | upstream | 3236299 | 30887995 ~ 30894827 (+) | True | AMCG00004056 |
| TU6431 | other | upstream | 3859602 | 30271210 ~ 30271524 (+) | True | G5245 |
| TU5898 | other | upstream | 6027915 | 28062363 ~ 28103211 (+) | True | G4831 |
| TU7209 | other | downstream | 719251 | 34852863 ~ 34870320 (+) | True | AMCG00004138 |
| TU7437 | other | downstream | 1618921 | 35752533 ~ 35766180 (+) | True | AMCG00004158 |
| TU7524 | other | downstream | 2138580 | 36272192 ~ 36274930 (+) | False | AMCG00004167 |
| TU7741 | other | downstream | 2640389 | 36774001 ~ 36774523 (+) | True | G6314 |
| TU7756 | other | downstream | 2727935 | 36861547 ~ 36891746 (+) | True | G6328 |
