RNA id: AMCG00004124


Basic Information

Item Value
RNA id AMCG00004124
length 794
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00004124
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34666392 ~ 34685790 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAATGTTGAAGGAGTTGAACGAGCAACGCAGAGCGAAAGAATTTACAGACCTGAAAATTATTGTTGAAGGCAAAGAGTTTGAAGTCCACCAAAATGTTCTAGCTTCCTGCAGCTTGTATTTCAAGGACCTGGTTAAAAGGTCATCAGGGGAGAGCAGGAACGGCGAGAAGCTGGAGCTGACCATGAGCAACATTGGAGCCGACGTCCTGGGGCTGCTGCTGGAGTTTGTTTACACGGGCTCCCTGATCATTGACTCCGTCAACGCCAAGACACTGCTGGAGGCCGCCAACAAGTTCCAGTTCAATACCTTCTGCAaagtctgtgtgtctttcttaGAAAAGCAGTTGACTGCCAGTAACTGTCTGGGAGTCTTGGCCATGGCCGAAGCCATGCAGTGCACTGAGCTCCACAACATGGCCAAGGCTTTTGCCCTGCAGAACTTCCCTGAGGTGGCCGGCCAGGAGGAGATCCTCAACATCTCCAAAGAGGACTTTGTCAGCTACCTGTCCAACGACAGCCTGAACACCAAAGCAGAGGAGCTGGTTTACGAAACTGTGATAAAGTGGATAAAGAAAGATCCAGGCAACAGAGTGCAGCACGTCTCGGAGTTGCTGGCCGTGGTGAGGCTACCCTTCATCCACCCCAGTTACCTGCTGAACATTGTGGACAACGAAGAGCTGATAAAGTCCTCAGAAGCCTGCAGGGACTTGGTCAACGAAGCAAAGCGCTATCACATGTTGCCCCATGCACGGCAGGAGATGCAGACGCCAAGGACTCGACCAAGGCTATCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7148 lncRNA upstream 284293 34381868 ~ 34382099 (+) True G5808
TU7144 lncRNA upstream 373891 34292271 ~ 34292501 (+) True G5804
TU7123 lncRNA upstream 576270 34081826 ~ 34090122 (+) True G5788
TU7121 lncRNA upstream 585607 34078351 ~ 34080785 (+) True G5787
TU7098 lncRNA upstream 773249 33892474 ~ 33893143 (+) True G5768
TU7220 lncRNA downstream 208312 34894102 ~ 34895661 (+) True G5867
TU7229 lncRNA downstream 213846 34899636 ~ 35350027 (+) True G5875
TU7270 lncRNA downstream 615313 35301103 ~ 35306949 (+) True G5914
TU7378 lncRNA downstream 769886 35455676 ~ 35455887 (+) True G6002
TU7383 lncRNA downstream 780072 35465862 ~ 35466655 (+) True G6007
AMCG00004125 mRNA upstream 27723 34631221 ~ 34638669 (+) True AMCG00004125
AMCG00004122 mRNA upstream 532780 34131126 ~ 34133612 (+) True AMCG00004122
AMCG00004121 mRNA upstream 536369 34119571 ~ 34130023 (+) True AMCG00004121
AMCG00004115 mRNA upstream 753507 33905291 ~ 33912885 (+) True AMCG00004115
AMCG00004113 mRNA upstream 898756 33767046 ~ 33767636 (+) True AMCG00004113
AMCG00004126 mRNA downstream 9613 34695403 ~ 34724610 (+) True AMCG00004126
AMCG00004127 mRNA downstream 112599 34798389 ~ 34808422 (+) True AMCG00004127
AMCG00004128 mRNA downstream 134378 34820168 ~ 34834115 (+) True AMCG00004128
AMCG00004138 mRNA downstream 182202 34867992 ~ 34868880 (+) False AMCG00004138
AMCG00004137 mRNA downstream 278676 34964466 ~ 34977633 (+) True AMCG00004137
TU6919 other upstream 1535206 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 3771565 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 4394868 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 6563181 28062363 ~ 28103211 (+) True G4831
TU7209 other downstream 167073 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 1066743 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 1586402 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 2088211 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 2175757 36861547 ~ 36891746 (+) True G6328

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036147 True 1502 mRNA 0.54 6 NC_007131.7 44864169 ~ 45040916 (-)
grasscarp (Ctenopharyngodon idella) CI01000029_04611378_04794476.mRNA True 2619 mRNA 0.58 12 CI01000029 4611378 ~ 4794476 (-)