RNA id: AMCG00004125



Basic Information


Item Value
RNA id AMCG00004125
length 723
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00004125
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34631221 ~ 34638669 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTGAAAGGTTGCAAACAGCTTGTCAAGGTTTCTGGCCTGTCTCCAGGTGAAAACCAGTCACAGGGACAAATACTCGCCCCCACGGTCAGATGGGGGCAAACTCCTATTAACCAGTCAACACCCTGGGAGACGGATGAGCCACCAGCTAAACAGATGAGGGAGAACGATGGCACAGGTCCTTCAGCATGGGTCCCTCCAGTGGCCGCCGTCAGCCAGGCCAGTCTATTGGCGCACACGTACGGAATGGCCCAGCCAGTCTATAGTCAAGGCGTGAATGTTCAGGCACCTGTAATCGGAGTTACGCCAACCATGCAAACTCCAGTCCCCCCACATCACCCACTAATGACAGCACACTTCCAGCTCCCACAGCAGCCTTCACAGCCTCTCACTAACATGGTCATGAACATGCAGAGTCAGCCCCTTTACACGAACAGCCAGCCACCCATCACCATGTCCCCTATGACTGGGGTCTGTCAGGTGACGCACCCTGTGCACACTGTGGTAGGGAACGGTCACATGCCCCACCCTATGATGCAGCCTCCTGCTTTGCCTTCCGCGGCCCTGCCCAGTAACACTCCGCTAACCAATGGGCAGCCTGCTCCCCAGCCGCCACCCATCCCTCCGTCCAATCAGGAGAATCCAAATGGGCTACAGATGTTGCGAACCGTCGGCATGGGAAAGTACGAGTTTACAGATCCCTGGCATCCAAAAGGTAAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU7148 lncRNA upstream 249122 34381868 ~ 34382099 (+) True G5808
TU7144 lncRNA upstream 338720 34292271 ~ 34292501 (+) True G5804
TU7123 lncRNA upstream 541099 34081826 ~ 34090122 (+) True G5788
TU7121 lncRNA upstream 550436 34078351 ~ 34080785 (+) True G5787
TU7098 lncRNA upstream 738078 33892474 ~ 33893143 (+) True G5768
TU7220 lncRNA downstream 255433 34894102 ~ 34895661 (+) True G5867
TU7229 lncRNA downstream 260967 34899636 ~ 35350027 (+) True G5875
TU7270 lncRNA downstream 662434 35301103 ~ 35306949 (+) True G5914
TU7378 lncRNA downstream 817007 35455676 ~ 35455887 (+) True G6002
TU7383 lncRNA downstream 827193 35465862 ~ 35466655 (+) True G6007
AMCG00004122 mRNA upstream 497609 34131126 ~ 34133612 (+) True AMCG00004122
AMCG00004121 mRNA upstream 501198 34119571 ~ 34130023 (+) True AMCG00004121
AMCG00004115 mRNA upstream 718336 33905291 ~ 33912885 (+) True AMCG00004115
AMCG00004113 mRNA upstream 863585 33767046 ~ 33767636 (+) True AMCG00004113
AMCG00004110 mRNA upstream 869764 33747909 ~ 33761457 (+) True AMCG00004110
AMCG00004124 mRNA downstream 27723 34666392 ~ 34685790 (+) True AMCG00004124
AMCG00004126 mRNA downstream 56734 34695403 ~ 34724610 (+) True AMCG00004126
AMCG00004127 mRNA downstream 159720 34798389 ~ 34808422 (+) True AMCG00004127
AMCG00004128 mRNA downstream 181499 34820168 ~ 34834115 (+) True AMCG00004128
AMCG00004138 mRNA downstream 229323 34867992 ~ 34868880 (+) False AMCG00004138
TU6919 other upstream 1500035 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 3736394 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 4359697 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 6528010 28062363 ~ 28103211 (+) True G4831
TU7209 other downstream 214194 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 1113864 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 1633523 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 2135332 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 2222878 36861547 ~ 36891746 (+) True G6328

Expression Profile