RNA id: AMCG00004210


Basic Information

Item Value
RNA id AMCG00004210
length 943
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00004210
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37832623 ~ 37847720 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTGCTGGAATGGGTAATCTTCTAAAAGTCCTAACAAGGGAAATAGAAAACTATCCTCATTTTTTCCTGGACTTTGAAAGTAAaaaCCAAATGGGGAATCTGTTAAAAGTTCTCACTTGCACAGAGCTTGATCAGGGGCCAAACTTTTTCCTTGACTTTGAAAATGCACAACCTACAGAGTGTGAAAAGGAAGTGTGGAACCAGGTCAATGCCGTGCTGCAGGACTCCGAGAGTATACTCTCTGGCCTGCAGGCGTACAAGGGAGCTGGGCAGGAGATAAGAGAAGCAATACAAAATCCAAATGACTATCACCTCCAGGAGCAAGCGTGGAACTCCGTCTGTCCGCTTGTCATACGTCTCAAGAGGTTCTATGAATTCTCTTTAAGGCTAGAGAAAGCACTGCAGAGCCTCCTGGAGTCCCTGACATGTCCGCCCTACACTCCGACACAGCACCTGGAGAAAGAGCAGGCGCTGGCCAAGCAGTTTGCGGAGATCCTTCACTTTACACTCCGGTTTGATGAGCTCAAGATGAGAAATCCAGCCATTCAGAATGACTTCAGTTATTACAGGCGGACAATAAGTCGAAACAGgataaataacatgaatTTAGACATTGAAAACGAAGTCAACAATGAAATGGCGAACAGAATGTCACTGTTTTACGCGGAGGCCACGCCGATGTTGAAAACGCTCAGTACTGCCACAACAAACTTTGTATCTGAGAACAAAACTCTGCCTCTGGAAAACACAACGGACTGCTTAAGCACTATGGCGAGTGTATGTAAAGTAATGCTGGAGACGCCGGATTACACGAGTCGATTCAACAGCGAGGACACCCTGCTGTTCTGCATGCGAGTTATGGTTGGAGTCATAATCTTGTACGATCATGTGCATCCAGCTGGGGCCTTTACAAAGGCTTCAAAAATTGATAAAGTGAAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7929 lncRNA upstream 316125 37514882 ~ 37516498 (+) True G6471
TU7873 lncRNA upstream 488178 37344061 ~ 37344445 (+) True G6428
TU7870 lncRNA upstream 491609 37337526 ~ 37341014 (+) True G6427
TU7861 lncRNA upstream 514477 37315645 ~ 37318146 (+) True G6421
TU7844 lncRNA upstream 567119 37158176 ~ 37265504 (+) True G6405
TU8059 lncRNA downstream 408458 38255229 ~ 38255483 (+) True G6573
TU8071 lncRNA downstream 569827 38416598 ~ 38418776 (+) True G6585
TU8073 lncRNA downstream 619625 38466396 ~ 38466643 (+) True G6586
TU8085 lncRNA downstream 769473 38616244 ~ 38616464 (+) True G6598
TU8105 lncRNA downstream 903143 38749914 ~ 38756252 (+) True G6617
AMCG00004208 mRNA upstream 225401 37570803 ~ 37607222 (+) True AMCG00004208
AMCG00004209 mRNA upstream 262357 37567333 ~ 37570266 (+) True AMCG00004209
AMCG00004198 mRNA upstream 286835 37529762 ~ 37545788 (+) True AMCG00004198
AMCG00004205 mRNA upstream 346991 37478830 ~ 37485632 (+) True AMCG00004205
AMCG00004206 mRNA upstream 353936 37476289 ~ 37478687 (+) True AMCG00004206
AMCG00004215 mRNA downstream 242092 38088863 ~ 38186137 (+) True AMCG00004215
AMCG00004216 mRNA downstream 366611 38213382 ~ 38220095 (+) True AMCG00004216
AMCG00004214 mRNA downstream 378785 38225556 ~ 38226811 (+) True AMCG00004214
AMCG00004218 mRNA downstream 884737 38731508 ~ 38743566 (+) True AMCG00004218
AMCG00004222 mRNA downstream 979050 38825821 ~ 38833968 (+) True AMCG00004222
TU7800 other upstream 832465 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 940877 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 1058100 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 1557693 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 2066443 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 3612805 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 4365739 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 4842008 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 8115239 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 10300117 48146888 ~ 48147156 (+) True G7999

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034752 False 1850 mRNA 0.40 12 NC_007131.7 35255403 ~ 35298023 (+)