RNA id: AMCG00004228


Basic Information

Item Value
RNA id AMCG00004228
length 3180
RNA type mRNA
GC content 0.45
exon number 28
gene id AMCG00004228
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 39249462 ~ 39293233 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGCAAAGCTACGAGAGCTACTGGATGTTGGGAACATGGGAGGGAGGATTGAGAACAAAATGCTCACCGTGGTGTGTGGCCCTGATATGGTTAACATCACCTACATGAACTTCATGGCTTTTCAGGAGGAAGTTGCAAAGGAATGGGCTGATGAGCTATTTGCTCTGGCATCAAACTTGCTGGCACAGAACATGTCCAGGGAGTCCTGCCTGGAAAAAGCATATACAAGGCTTAAGCTTCAGCTAACCCCAGAGGGCCGTATTCCTGTTAAGAACATCTTTCGGCTGTTTTCTGCAGACAGAAAGCGTGTTGAAACTGCCCTGGAATCCTGCAACCTTCCTTCAGGCAGGAATGACTCCATTCCCCAAGAGGACTTCACACACGATGTATACCGGGTTTTCCTGAACAACCTATGCCCACGACCAGAAATTGACCACATTTTTTCAGAATATGGTGCCAAAAGCCGGCCTTACCTGACTGTCGATCAGATGACAGAATTCATAAACACGAAGCAGCGGGACCCTCGTCTGAATGAAATACTCTACCCACCACTGAAGCTGGAACAAGTGCAGCAGCTCATAGAGAAATACGAACCGAATATGAACTTGGCAAAAAAAGGGCAGATATCAGTAGAAGGTTTTACACGGTATTTAAGCAGTGAAGAAAATGGAGTTATTCCTCCTGAAAAACTGGACCAGAGCGAAGACATGACCCTGCCTTTATCACACTACTTCATCAACTCCTCGCACAACACTTACCTCTCAGCTGGGCAGCTGGCTGGTAACTCCTCTGTTGAGATGTACAGACAAGTGCTCCTGTCAGGCTGCCGCTGTGTGGAGCTGGACTGCTGGAAGGGACGGACAGCAGAAGAGGAGCCTGTTATTACACATGGATTCACCATGACAACAGAGATATCCTTCAAGGAAGTCATTGAGGCGATTGCTGAGTGTGCGTTCAAGACTTCACCCTTTCCGgttattttgtcttttgaaaaCCATCTTGAAGCAGGTGTTCCTCTGCCAAGTCCGCTGGAGCTAATGGGCAAAATTctcatcaaaaacaaaaagaaatccCACAAGTCCTCCGATGGAAGTGCTAAAAAGAAACTTTCTGAGCAAGCCTCGAACACATACAGTGACACCTCTAGTGTATTTGAACCCTCATCTCCAAGCGCAGGATCCAACAACCCTGAAATCCCAGAAGTAGCACAGCAGTCAACTCAAGATGGAAATGATCTGAAACCACATGGAAGAAAATCAATAGGAGAGGTGGAGGCTGAGAGCGaagatgatgacgatgatgacgATGACTGTAAAAAGTCCTCCATGGATGAGGGGACTGCGGGAAGTGAGGCTTTTGCCACTGAAGAAATGTCAAACCTCGTAAACTACATACAGCCCGTGAAGTTTGACAGTTTCGAAGGTTCCAAAAaaattaaCAGAAGTTTTGAAATGTCATCATTTGTGGAGACAAAAGCCCTAGAGCAGCTGACCAAGTCACCTGTTGAGTTTGTGGAGTATCCTTTTGTAATGAAGATGGAGTACAACAAGTTACAGCTCAGCCGCATCTATCCCAAGGGCACCAGAGTCGACTCTTCTAACTACATGCCTCAAGTCTTCTGGAATGCAGGATGTCAACTGGTAGCATTAAACTTCCAAACTATAGACCTCTCAATGCAGTTAAACCTTGGGATGTATGAATATAACGGCAAGAGTGGCTATCGGCTCAAACCTGAATTCATGAGGCGTCCAGACAAGCACTTTGACCCTTTCACAGAGAGCACTGTGGATGGAATCGTAGCAAACACCTTGTCAGTCAAGataatATCGGGCCAGTTTCTATCAGATAAGAAAGTTGGGACTTACGCAGAAATCGACATGTTTGGACTTCCTGTCGATACAAGAAGGAAAGCTTTCAAGACAAAGACCTCACAAGGAAATGCTGTCAATCCTATTTGGGAGGAGGACCCTATAGtgtttaaaaagGTAGTTCTGCCCTCGTTGGCATCCCTGAGAATAGCAGTGTTTGAAGAAGGTGGTAAATTTATAGGCCACAGAATTATCCCTGTCTCTGCTATCCGACCAGGGTACCACTACATTGGCCTGAGAAATGAAAAGAACCAGCCTCTTACTCtgcctgctgtttttgtgtacATCGAAGTGAAGGATTATGTGCCTGATACCTTTGCTGATGTGATCGAGGCCCTGTCCAACCCTATCAGATATGTCAACCTAATGGAGCAGAGAGCCAGGCAGCTAGTGGCTCTGACActtgaagaagaagaggaaattAACAAAGAGGTTGAACCTGGCGATGCCCCTTCAGAGCCCAGCGCTGAGCCCAAGCCGGCACCAGCAGAGAATGGTGTAAATCACGCAACGTGCATCGCCCCCAAACAACCATCTCAGATTGTGCATCCTCCGCCACAGACTGGTTCGGTGAAACCAGCAGTAAAGACCGAAGATGTCATCCAGAGTGTCCTCAGTGAGATGGAAGCACAGACCATTGAGGAGctgaaacaacaaaaagcatttgtaaGGGAACAGAGAAAGCATTACAAAGAAATGAAGGAGCTCGTAAAGAAACATCACAAGAAAACGACGGACATGATAAAAGAGCACACGGCCAAATATAATGAGTTTCAGAATGAGTACTTACGGAGAAGGGCCGTGCTACAAAAATCTGCAAAGAGAGATGGTAAGAAAAGGGGCACATCATCCAGTCCAGATCACAATCCGTCGTCAATCGAACAAGAATTGTCTGCTTTGGATCTGGAGAGCAGCCAGAAATTAGCAGAGCTGAaggagcagcagcaacagcagctcctCAACCTCAGACAGGAGCAATATTACAGTGAGAAATACCAGAAACGGGAGCACATTAAACAGCTAGTGGAGAAACTGACAGTGGTAGCTGAGGAATGCCAGAACAACcaaatgaagaaattaaaagagaTTTGTGAAAAagaaaagaaagacttgaagaagaaaatggacaaaaaaaGACAGGAGAAGATCAATGAGGCCAAATCGAGAGAGAAAAATCTAACAGAAGAATCCTACGTCAATGAAGTGGTGCAGTACATCAAACGTTTAGAAGATGCTCAAAgtaaaagacaagaaaaactCATAGAGAAACACAAGGATATTCGCCAGCAGATCTTGGATGAGAAACCTAAG

Function

GO: NA

KEGG:

id description
K05858 PLCB; phosphatidylinositol phospholipase C, beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8179 lncRNA upstream 101168 39122547 ~ 39148294 (+) True G6684
TU8180 lncRNA upstream 101168 39122678 ~ 39148294 (+) False G6684
TU8170 lncRNA upstream 282572 38966678 ~ 38966890 (+) True G6676
TU8160 lncRNA upstream 322432 38926738 ~ 38927030 (+) True G6667
TU8146 lncRNA upstream 390457 38858118 ~ 38859005 (+) True G6653
TU8288 lncRNA downstream 475151 39768384 ~ 39768607 (+) True G6769
TU8290 lncRNA downstream 477232 39770465 ~ 39770698 (+) True G6771
TU8339 lncRNA downstream 651267 39944500 ~ 39945055 (+) True G6807
TU8358 lncRNA downstream 722034 40015267 ~ 40034323 (+) False G6819
TU8359 lncRNA downstream 722034 40015267 ~ 40034323 (+) False G6819
AMCG00004225 mRNA upstream 285827 38954137 ~ 38963635 (+) True AMCG00004225
AMCG00004224 mRNA upstream 394145 38850789 ~ 38855317 (+) True AMCG00004224
AMCG00004223 mRNA upstream 399451 38840016 ~ 38850011 (+) True AMCG00004223
AMCG00004222 mRNA upstream 415494 38825821 ~ 38833968 (+) True AMCG00004222
AMCG00004218 mRNA upstream 505896 38731508 ~ 38743566 (+) True AMCG00004218
AMCG00004229 mRNA downstream 9476 39302709 ~ 39312703 (+) True AMCG00004229
AMCG00004230 mRNA downstream 104270 39397503 ~ 39436248 (+) True AMCG00004230
AMCG00004233 mRNA downstream 147893 39441126 ~ 39442709 (+) True AMCG00004233
AMCG00004231 mRNA downstream 151966 39445199 ~ 39453488 (+) True AMCG00004231
AMCG00004240 mRNA downstream 266259 39559492 ~ 39559927 (+) True AMCG00004240
TU7800 other upstream 2249304 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 2357716 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 2474939 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 2974532 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 3483282 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 2166343 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 2919277 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 3395546 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 6668777 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 8853655 48146888 ~ 48147156 (+) True G7999

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023426 False 3021 mRNA 0.49 27 NC_007128.7 3841012 ~ 3986236 (-)
grasscarp (Ctenopharyngodon idella) TU503895 False 2682 lncRNA 0.51 23 CI01000310 426712 ~ 490523 (+)