RNA id: TU8288


Basic Information

Item Value
RNA id TU8288
length 224
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G6769
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 39768384 ~ 39768607 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgcaaattcattaaaaataaaaaacaaaaaaagcacatgtacataagtattcacagcctttgctcaatactttgttgaagcacctttggcaccaattacagcctcaagtctttttgagtatgatgctacaagcttggcacacctatttttgggcagtttctcccattcttctttgcaggacctctcaagctccatcaggttggatggggagcgtcagtGCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8179 lncRNA upstream 620090 39122547 ~ 39148294 (+) True G6684
TU8180 lncRNA upstream 620090 39122678 ~ 39148294 (+) False G6684
TU8170 lncRNA upstream 801494 38966678 ~ 38966890 (+) True G6676
TU8160 lncRNA upstream 841354 38926738 ~ 38927030 (+) True G6667
TU8146 lncRNA upstream 909379 38858118 ~ 38859005 (+) True G6653
TU8290 lncRNA downstream 1858 39770465 ~ 39770698 (+) True G6771
TU8339 lncRNA downstream 175893 39944500 ~ 39945055 (+) True G6807
TU8358 lncRNA downstream 246660 40015267 ~ 40034323 (+) False G6819
TU8359 lncRNA downstream 246660 40015267 ~ 40034323 (+) False G6819
TU8360 lncRNA downstream 251469 40020076 ~ 40034323 (+) True G6819
AMCG00004235 mRNA upstream 170130 39592943 ~ 39598254 (+) True AMCG00004235
AMCG00004240 mRNA upstream 208457 39559492 ~ 39559927 (+) True AMCG00004240
AMCG00004231 mRNA upstream 314896 39445199 ~ 39453488 (+) True AMCG00004231
AMCG00004233 mRNA upstream 325675 39441126 ~ 39442709 (+) True AMCG00004233
AMCG00004230 mRNA upstream 332136 39397503 ~ 39436248 (+) True AMCG00004230
AMCG00004236 mRNA downstream 70761 39839368 ~ 39846699 (+) True AMCG00004236
AMCG00004246 mRNA downstream 117058 39885665 ~ 39892826 (+) True AMCG00004246
AMCG00004249 mRNA downstream 241918 40010525 ~ 40012375 (+) True AMCG00004249
AMCG00004250 mRNA downstream 253022 40021629 ~ 40030108 (+) True AMCG00004250
AMCG00004248 mRNA downstream 269104 40037711 ~ 40054452 (+) True AMCG00004248
TU7800 other upstream 2768226 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 2876638 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 2993861 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 3493454 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 4002204 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 1690969 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 2443903 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 2920172 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 6193403 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 8378281 48146888 ~ 48147156 (+) True G7999

Expression Profile