RNA id: AMCG00004250


Basic Information

Item Value
RNA id AMCG00004250
length 255
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00004250
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40021629 ~ 40030108 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGGCTATACCTGCAAGTGCCCTGAGGGCTATGAGCTGGCAGAGGATTGGAGGAAATGCAGAGACATTGACGAATGTACACAGTTGCCAGATCTTTGTGAAGCAGACAAGATATGTTATAACGTGCCGGGGAGCTGACACAGTGGGGCTGGCCACTTTCCTGGTGGTGGACCCTGCCTTTGCTGTGCTCCGTTGCTCTCCACCACACCAAGAGACTTTGTCAGGCCAAACCACCAGTGCAGATCTACTGTGA

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8339 lncRNA upstream 76574 39944500 ~ 39945055 (+) True G6807
TU8290 lncRNA upstream 250931 39770465 ~ 39770698 (+) True G6771
TU8288 lncRNA upstream 253022 39768384 ~ 39768607 (+) True G6769
TU8179 lncRNA upstream 873335 39122547 ~ 39148294 (+) True G6684
TU8391 lncRNA downstream 58500 40088608 ~ 40088914 (+) True G6840
TU8398 lncRNA downstream 80092 40110200 ~ 40113951 (+) True G6847
TU8401 lncRNA downstream 118854 40148962 ~ 40198962 (+) True G6850
TU8456 lncRNA downstream 308959 40339067 ~ 40341208 (+) False AMCG00004257
TU8623 lncRNA downstream 947891 40977999 ~ 40978319 (+) True G7048
AMCG00004249 mRNA upstream 9254 40010525 ~ 40012375 (+) True AMCG00004249
AMCG00004246 mRNA upstream 128803 39885665 ~ 39892826 (+) True AMCG00004246
AMCG00004236 mRNA upstream 174930 39839368 ~ 39846699 (+) True AMCG00004236
AMCG00004235 mRNA upstream 423375 39592943 ~ 39598254 (+) True AMCG00004235
AMCG00004240 mRNA upstream 461702 39559492 ~ 39559927 (+) True AMCG00004240
AMCG00004248 mRNA downstream 7603 40037711 ~ 40054452 (+) True AMCG00004248
AMCG00004251 mRNA downstream 29838 40059946 ~ 40083528 (+) True AMCG00004251
AMCG00004254 mRNA downstream 154769 40184877 ~ 40194871 (+) True AMCG00004254
AMCG00004256 mRNA downstream 190416 40220524 ~ 40228831 (+) True AMCG00004256
AMCG00004255 mRNA downstream 205420 40235528 ~ 40248464 (+) True AMCG00004255
TU7800 other upstream 3021471 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 3129883 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 3247106 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 3746699 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 4255449 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 1429468 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 2182402 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 2658671 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 5931902 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 8116780 48146888 ~ 48147156 (+) True G7999

Expression Profile