RNA id: AMCG00004255


Basic Information

Item Value
RNA id AMCG00004255
length 1824
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00004255
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40235528 ~ 40248464 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGGCCGAGTCGCATCCCCAGCCCTGCCGGCTCCACGCACACCCTGGGCCACTGGACCTTCCTCATCCCCTCCGGTACCTGCTGTGGACGCAAGTGCTGTTATTGATGGTGGGAGAGGCATGTGCGCACCCCCAGTGCTTGGACTACCGACCCCCATTTAAGCCCCATTACCACCTGGAGTTCTGCACTGAGTATGAGAGTTATGGGTGCTGTGACCAGACCACGGACAACGCCATTGCAGAGAGATACTGGGACATCATGGACTTATATGACATCCAGGGGTACGAGTTGTGCGGGGGGTTGGTCAAAGACATCCTCTGCCAGGAGTGCTCTCCCTATGCTGCTCACCTGTACGATGCAGAGAATCCTTATACTCCCATAAGGGACCTCCCAGGCCTCTGCTTCGACTACTGCTCCGAGTTCCACATCAAGTGCCACTCCGTTGTGAAGCTTCTGACGGACGACAAGAAGATCCTGGAGTCCTGCGAGAAGGACAGGTACATGTTTTGCAACCTCATCAACCTGCCAGACCAGGACTACTGTTACCCCAAAGTGCTGGAGAACATGGTTCTCAACCGCAACCTGGGCACCATGGTTCAGGATAGGAATGGCTGCTTGCAACTGTGCCTGACAGAGGTGGCCAACGGGCTGAGGAACCCTGTGCTGATGCTGCACAGCAACGATGAGACCCACCGCATGTTCGTGGCTGAACAGCTGGGCTTTGTGTGGGTCTACCTGCACAATGGCAGCCGTGTGGAGGAACCTTTCCTGGACCTCAGTGGCATGGTGCTGACCACCCCTTGGTTTGGGGATGAGCGAGGCTTCCTTGGGCTTGCCTTTCACCCGCATTACAGAAACAACGGGCGTTTCTTTGTCTACTACTCCGTCTTGGTAAATGACAATGTCGAGAAGATCAGGATCAGTGAGATGAAGGTGTCCTCCTATGATATGAACAAGGCAGATCCCCATTTTGAAAGGGTTATTTTGGAAATTGAAGAACCTGCAGCTAATCATAACGGTGGACAGCTATTGTTCGGTCTTGATGACTACTTGTATGTATTCACTGGAGATGGGGGGAAAACTGGGGACCCTTTTGGGAAGTTCGGCAATGCTCAAAACAAGAGTGCTCTTTTGGGAAAAGTGTTACGCATTGATGTGGATGTCAGCGACATGGATGGAAAGCCATACAGGATCCCAGATGACAACCCTTTCATTTCTGACCAGAGTGCTCGACCGGAGGTGTACGCTTATGGAGTGAGGAACATGTGGCGTTGCTCTGTGGACCGCGGAGAGCTGGTCACTCAGAGAGGAAGGGGAAGGATATTCTGTGGGGATGTGGGCCAGAACAGATATGAGGAAATTGACATAATCGTGAAAGGAGGCAATTATGGATGGAGGGCAAAAGAGGGATTTGAGTGCTATGATGATAAGTTGTGTCACAACTCATCGTTAGATGACATCCTTCCAATTTTTGCATATAGTCACCGTGAAGGCAAATCTGTCACAGGGGGATATGTGTACAGAGGGTGTGAGTCACCTAATCTTGACGGCTTGTACTTCTTTGGGGACTTCATGAATGGtCGACTTATGGCATTACAGGAAGATAAGATGACAGGGACCTGGGAAGAGAAGGGCATCTGCATGGGTGACACGAAGACATGCTCCTTTCCTGGGCTGATCAATCAGCACCATGTGTTTATTATCTCTTTCGCTGAGGATGAAGCAGgtGAGCTGTACTTCATGGCTACTTCAATGCCAACCTCTGTATCCCCATTTGGAACAATATACAAATTTGTAGACCCATCAAGGTATGTATTTTAG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8401 lncRNA upstream 36566 40148962 ~ 40198962 (+) True G6850
TU8398 lncRNA upstream 121577 40110200 ~ 40113951 (+) True G6847
TU8391 lncRNA upstream 146614 40088608 ~ 40088914 (+) True G6840
TU8359 lncRNA upstream 201205 40015267 ~ 40034323 (+) False G6819
TU8456 lncRNA downstream 90603 40339067 ~ 40341208 (+) False AMCG00004257
TU8623 lncRNA downstream 729535 40977999 ~ 40978319 (+) True G7048
TU8658 lncRNA downstream 1046834 41295298 ~ 41364066 (+) True G7078
TU8666 lncRNA downstream 1118681 41367145 ~ 41368478 (+) True G7084
TU8687 lncRNA downstream 1274589 41523053 ~ 41529308 (+) True G7102
AMCG00004256 mRNA upstream 6697 40220524 ~ 40228831 (+) True AMCG00004256
AMCG00004254 mRNA upstream 40657 40184877 ~ 40194871 (+) True AMCG00004254
AMCG00004251 mRNA upstream 152000 40059946 ~ 40083528 (+) True AMCG00004251
AMCG00004248 mRNA upstream 181076 40037711 ~ 40054452 (+) True AMCG00004248
AMCG00004250 mRNA upstream 205420 40021629 ~ 40030108 (+) True AMCG00004250
AMCG00004257 mRNA downstream 77946 40326410 ~ 40341235 (+) True AMCG00004257
AMCG00004265 mRNA downstream 322496 40570960 ~ 40598834 (+) True AMCG00004265
AMCG00004264 mRNA downstream 357990 40606454 ~ 40618190 (+) True AMCG00004264
AMCG00004266 mRNA downstream 473699 40722163 ~ 40729804 (+) True AMCG00004266
AMCG00004268 mRNA downstream 562922 40811386 ~ 40824981 (+) True AMCG00004268
TU7800 other upstream 3235370 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 3343782 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 3461005 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 3960598 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 4469348 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 1211112 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 1964046 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 2440315 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 5713546 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 7898424 48146888 ~ 48147156 (+) True G7999

Expression Profile