RNA id: AMCG00004297


Basic Information

Item Value
RNA id AMCG00004297
length 6402
RNA type mRNA
GC content 0.45
exon number 15
gene id AMCG00004297
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 41896251 ~ 41916088 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAGCAGGGCGCCCCAGCAGCAGCCTCAGACCTACAATCTAGTGGCTCCACAGGCCTGGGATGCAGCATTTACCTGGCAGAGAAAAGAGCCAGACTTGTTGCTGTGATGAATGCGATGGACGAACCTGCAGGGAACGAGGCacagaaggaggaggaggaggtggtcgCCAGCCAGCTCCCTCCACAGCAGCACACGGATCCAGCCTCACCCATTGTGGCCACCACCCCCGAGCCCGTCTCTGTGGAAAGTGTAGACAAAACCATCCCCAGGTCAACAGACGTGGAACCCGAATACGAGGACGGCCGTGGCTTTGGGATTGGGGAGCTGGTGTGGGGGAAGCTGAGAGGATTCTCGTGGTGGCCAGGCCGCATCGTGTCCTGGAGGATGACTGGACGGAGCAGAGCTGCCGAGGGAACCAGATGGGTAACGTGGTTCGGTGACGGCAAATTTTCAGTGGTCTGTGTGGAGAAATTGATGCCTTTGAGTTCATTCTCTAATGCCTTTCACCAGCCATCTTATAACAAACAGCCCACATACAAGAAAGCAATCTTCGAGGTTCTGCAGGTGGCTAGCAGCAGAGCAGGAAAGATCTTCCCCGCCTGTCCCGACAGCGACGAGTCCGACACTTCCAAATCAGTGGACTTTCAGAACAAGCAGATGATTGAGTGGGCAATGGGAGGATTTCAACCAACTGGGCCAAAGGGCTTGGAGCCCCCAGAAGATGAGCGCGATCCCTACAAAGAAGTTTACACTGATATGTGGGTGGAGCCGGAAGCAGCAGCCTATACCCTCCCTCCGCCAGCCAAAAAACCCAGGAAAAGCACTGCAGAAAAGCCCAAGATTAAGGAGATCATAGACGAGGGGACCCGAGCCCAGGCTGCCATTAAAGAGGATCCCTGGAACTGCTACATGTGCGAAACCAAGGGCGTCTATGGGCTGCTGCAGCGGAGAGATGACTGGCCCTCCCGCCTCCAGCACTTCTTTGCCAATAACCACGACCAAGATTTTgACCCACCAAAGCTATACCCCCCAGTGTCCGCTGAGAAGAGGAAACCAATTCGCGTCCTATCGCTCTTTGATGGTATTGCAACAGGTCTGCTGGTGCTGAAAGACCTTGGGATTCAGGTGGACCGGTACATTGCCTCCGAGGTGTGTGAGGACTCCATCACTGTGGGAATCGTGCGACACCAGGGCCGGATCATGTACGTGGGAGACGTGAGGAATGTCACGCGCAAACATATACATGAGTGGGGCCCCTTTGACTTGGTCATCGGGGGAAGCCCTTGCAATGACCTCTCCATCGTGAATCCAGCTAGGAAAGGCCTCTATGAGGGGACGGGCCGTTTGTTTTTCGAGTTCTACCGGCTGCTCCACGAGGCGCGCCCAAAGGAGGGAGACGAGAGGCCCTTCTTCTGGCTGTTTGAGAACGTGGTGGCCATGGGCGTCAGTGACAAGAGAGACATCTCCCGCTTCCTCGAGTGTAACCCAGTGATGATTGATGCCAAGGAGGTCTCTGCCGCCCACCGAGCACGTTACTTCTGGGGTAACCTTCCTGGTATGAACAGGTTGGTGAGAGAACGACCCCTCACCGCCATGAACAATGACAAACTGGATCTGCAGGAGTGTCTGGAGCATGGCAGGACAGCCAAGTTCAGCAAAGTGAGAACCATCACCACTCGGTCTAATTCTATCAAGCAGGGCAAAGACCAGCACTTCCCCGTCTACATGAACGAAAAGGAAGACATTCTGTGGTGCACTGAGATGGAGAGggTATTTGGCTTCCCTGTCCATTACACAGATGTCTCCAACATGAGCCGCCTGTCCAGGCAGAGACTCTTGGGACGATCCTGGAGTGTCCCAGTCATTCGCCACCTGTTTGCACCACTGAAAGAGTACTTCGCCTGTGTTTAGAATCCACacttgcagaaaaaaaagaaaaaaaaacaaacacaagaactgatatttaacaagaaacaaatgataaaaaatatgaaattttaCTCTGATTatttacaagaaacaaaatacatttaaagtagatgttttacataatttcttgtattttaaatgtcattcttTTAtcctatttaatttttttaatgtcattttaatttttagcAATGTTCAgtaaatttttaaaaattgattttcGTGTGTAAGCTGTACTTGAGGCAAGGCTTTCTTTTTACAGCACTGAGACATGTCTGATGAGAAGGACTGAGACCTACAGAACAGCTGAAAGCAATGACCTTCCTTAAgatgcacatatatatactgcatgAATGTATGAGCACGTGTATATGTGTGCGTATTAATTTGGCAATCATTGCGGCCTGGTCTTGAAGAATAGGAGCACAAGCCAGGGGGCCACCACAAAATGCTATTCACTTCCAGTTGCTGAGCCTTACAGAATAAGGAACCAGTcatgcatatgtttttttacagtttttatggTTCTGTCCTAAGGAATCCTTGGAATCAGAAACAACCATTCACTTATACCTCTcgtttacagtttatttaaataacttaaaaggTACTACTGTAAAATGGTGACTATATTATGGTGCTTTTAAAAGACTACGATGATAAAAAACATCCGCTTCCATGTGGCCTTACAACTTTGTCTGAACAGGGTTGTGATGACAGATGCAAAGgagtttatttttgctttctttgtcttttttttgtcatggtGAAGGGCGTTCAGGTGACTTCTGTGTGAGAAGTTATACAATGCAATAAGTTGTATATGAAGTCACTGTAAACTAAAGCCTAAACGGGCAgagaaagcaaaagaaagaacggaagaaagaaaaagaaaatgcaaataatctgccattactgtattttttttctaccaCAGCTTTTATACAGAACTTACTGGTGCTTTTCAATACTTTGGCCTTATCTTCTCAGGCCACACCTATGGCAGCACAAATGAACCTAAAGCCAATCAAATGGTTAGCGATGTTTTTTCGTCATCCTAAAACCTTGAGATCACAGACTGCGGTGAGCTGCTCATGCAGTTTCACTCAGACTGATGTCATTTTACTGTACAACTCTGCGGGAGTGGGGACTGAGGGCAGGCCGTTGTATAGCCAATTATATTCACCCTTCAGCCCCTGCCTCTGCAAGCTTTATTCAGTCAGGtgcaaataacaacaacatggTGCAGCTTCGCATTGCTGTTCTGCCTTTTTATAGGAGTTTTTTGCTGTATTATCAGCTTTGCTTAGcagttttgtatgtatattttctttgtccACTTTATCTTCCCCCCCTCCCTATccttgagtatttttttttattggtttctttgttttttgtttcactttatgATGTGAACTATTTGACCCTTGTAAGTACTTTTGGATCATGCTAGGGCTGTGCCAATGGATAAGGAAGAAAAGGGGTTCGTTGATGCTTATTTTTCTAATCAAATTCACAGAAGAGGATCAATGGTTTAAGTAGAGAAGTGGACGTGTGTATGAAATCACCCATCCACACCCACAGCAGCAAAAGTAAAATGGAACCCCTTCTCTTTTCATATCTTCCTCTACTTTAGGATAGGATTTGTCACTATATAATAGTTGGCATATCACGATGAAACTAAATATGTGCAGCATGTGGGACACACATGGGAGAAAGGAACGGCTTTAGATATTGTGTAGCTGAGCTTTAGGTTTTCAGTCTATCCCACTGCGCGTCTTGCAGCTGCTGTAGTATGCTCTGACCTGCCTGCCATGCTCAGTGCACTGTCACGTGTTTCTCTATGGTTCCTGTGGTGTCCACAGCTTTCCAGAAATGGTGGCATTTAGGACACCCTTGGTGcacaaaacttaaaaacaaatgcacacgtAATAGCCTTTTTCAAAAACACCTGTTGGGAGCAAGGATTTAAAAGCCAGCGTAAGAATGCACCGGGGGGGCAGAGTGTCATCCTGGTGACCTTAGACGTGTTTTTATGAAATGCAGATGAACGTTTCACCAGCAGCGAGAGTGAATTCAGATTAGTGCACTTAGTTCAAAAGCGATAACTCTGATATAGGCCATTCCCTGAGAGCCAGGATTGTTATTGACTGACGAATACCAGTGACAGGTAGTTAAACTCACACCCATCATCATTGCACTGGACTTGAACCACAACTTCAGCTTGTGATATGACCACAGTTGCTCCTTTCTCCTTTAAGTCCAACTCCATTATATGATGCCTGCATTCCTGTTCAGTACTGAAATGTAGACATGACATCACTGGGAAGTGGTCTGACACTGAGCAAGCGCTGTTCTCTCGTGTGCAGCAGGGGGCGTCTAGGTGTGTCCGCCGTGCCTCGGCCAGTGAAACCGCACCTGTGCCCCTCTGACGGAGATGGTGCCAGGCCAGGTGTCTACACTTGGTCTCGGATTTGCCCACTAAGGTCACTGTTCTCGCCTGTCCAGATGGTGTATTTTCACTCTGTTGTCAAAGGTGGCCTATCCCCTTGACATCTGCTTTGCGGGGAGGTGGGTCTGGGGTCCCTACATGTGTGAGCCCAACCTATTCTGCCTTAAGCAGTGGGTGGTACAGAAGGGTCTCCTATCCCCTTAGAGGAGGATTGCTGGTGGTTACACACCACATCCAGTCTCCAGGCTGCGCAGCCCAGGGGTGGTGGCCGATCGGCCCACAAGGTGGCAAAAGACCTTCCTCCCTGGCACAGTCCAGGCCCGTTCCACTGGACACCTGGCGACCTCGTGGGCCGTTCTCTTCCAGACCCCCGCAGTGCTGCGCCTTGGTCTTTCTCCACAGAGGTTTTGCGAGATTCTAGCGCCCAGGCACGTCGGAGCCATCCTCTCAGTGTTTGGTTTCCCGAGCTCTTGTGGGCAGCCTGAAGCCCCTTCGCCTGCCGATAGGTATGTGTCTTGCACTTGTCAACTGCTACCGGGTTTGAGATGGCTATGGTGTTGCCTTCCCAGTGAGGTAATGGTAGCATTTTGATTGTGAAAGGGAACTTTGGGCTATTATCGAGACCTTGGGCCTCTGACAGAGAACTGTAGTTTTGGGGTCGTAGTGCCCAGCTGGGTTAAACCCTGGCCACAAGCCCAATGCTGCACTGTGTCTTTGCTTCTTCTGCAAAAGAAGGGCAAGCTAGTGTTAGCACTGTAAGGCCCTTATTGCACCAACCCAATAGACATGTCCAGTACCTGGTCAGTGTGAGGCTGCTTTCCTGGGAGGGAACGATGACATCGCTCGTTCAAGGCATCGAGGCTGTGATAATAACccaatgtttttgtaaatagaCAAGTTCGcctgttgctgtttgtttgttatgtctttttaaattacttataaGATGTACAAATATGATTCTTTGCTAATATATATCATGAAATTAGTAAagcttggttaaaaaaaaatatgaatttgtattaaaataagctATGAAGCAGCGGGAATGGCAGGTGGGGTGATTTCTAGCCCACcttttgtatttatgaattgtttttatgtttgattGAAAAGTGAATTGTGATGATTTGTCAAGTGATCTTAATAATAACTTGTCGACAGCTTTAAGAAGGAGAAACTCAGCtttatcgcacagccctacatGCGgaggtttttgtttctttttctttttttaagaactaAAAGAGGGACTGTAGGTGTTTCATAAGGTGCTAAACATTTtatctaaaaagaaaacaaatatattgttagGAAAAATCAACTTGTCTTGACAATGACTGTTTTTAAGTTGTCGTAGTTATAAGAAgaaaaagcattattattttactcttatacaaatatattaacaaagGCATTTTAACTTTgtacttgaaaaaaaaataaaaaataaaaaaataatggagAGATTCATGTGTTTTAGCCTAGACATTGCTGTAGTTGGTGCTTATCTGTGGGAAAATCATGTATTCATATTGGAAATTAGAGAAAAAGAAACCTTTGGTAATAACTTTTACTGTTACATATGTACTTGCTTGATCCCTAGCAGCCGTGCTTCTCTACCCTACATTCCATGCAGCAGGATCGTCCGTGTTTCtttcttcctgtttgttttagatTCTGTTTCGTTGGACTGTAATTTTTACCGTCGCTTCGATATTTATTGACAacaataatgtgcatttcacaAGTCTGAGACTCTGCAGGTCAATTTCTCTATATTTCTCTCATAGTGAGATAGTGATACTGTTGTACTTCTGTGTAACTATTTCTCGTGACATAGCTGTTTATGGATTATACTATTCTAAAGGTCAGTGCGTACAACCAATGTAGCAGTCAGACTCAGTCCGCCTTCGTCCCATTATTTTCAGTGcccagaaagaagaaaaaggctCCTTTCTTATGTACTTGTGCTGGAGAACACTTgaataaatgtactgtttttgtgcaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8686 lncRNA upstream 289492 41605110 ~ 41606759 (+) True G7101
TU8687 lncRNA upstream 366943 41523053 ~ 41529308 (+) True G7102
TU8666 lncRNA upstream 527773 41367145 ~ 41368478 (+) True G7084
TU8658 lncRNA upstream 532185 41295298 ~ 41364066 (+) True G7078
TU8623 lncRNA upstream 917932 40977999 ~ 40978319 (+) True G7048
TU8805 lncRNA downstream 49926 41966014 ~ 41966233 (+) True G7182
TU8861 lncRNA downstream 149409 42065497 ~ 42067725 (+) True G7221
TU8872 lncRNA downstream 171703 42087791 ~ 42089653 (+) True G7231
TU8918 lncRNA downstream 417337 42333425 ~ 42336643 (+) True G7272
TU8928 lncRNA downstream 448780 42364868 ~ 42365654 (+) True G7278
AMCG00004295 mRNA upstream 43991 41829739 ~ 41852260 (+) True AMCG00004295
AMCG00004294 mRNA upstream 165815 41705110 ~ 41730436 (+) True AMCG00004294
AMCG00004293 mRNA upstream 229844 41652615 ~ 41666407 (+) True AMCG00004293
AMCG00004292 mRNA upstream 295277 41568409 ~ 41600974 (+) True AMCG00004292
AMCG00004291 mRNA upstream 345282 41543076 ~ 41550969 (+) True AMCG00004291
AMCG00004296 mRNA downstream 33283 41949371 ~ 41964474 (+) True AMCG00004296
AMCG00004299 mRNA downstream 94597 42010685 ~ 42024740 (+) True AMCG00004299
AMCG00004298 mRNA downstream 113289 42029377 ~ 42045091 (+) True AMCG00004298
AMCG00004301 mRNA downstream 131555 42047643 ~ 42065411 (+) True AMCG00004301
AMCG00004300 mRNA downstream 153440 42069528 ~ 42083842 (+) True AMCG00004300
TU8679 other upstream 389020 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 4896093 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 5004505 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 5121728 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 5621321 36272192 ~ 36274930 (+) False AMCG00004167
TU8899 other downstream 296422 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 772691 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 4045922 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 6230800 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 7016362 48932450 ~ 48934095 (+) True G8099

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024155 False 7747 mRNA 0.42 22 NC_007128.7 36936918 ~ 37052622 (-)
grasscarp (Ctenopharyngodon idella) CI01000062_01565388_01612161.mRNA True 2757 mRNA 0.53 20 CI01000062 1565388 ~ 1612161 (+)