G7272 (sod2,LOC102787761)


Basic Information

Item Value
gene id G7272
gene name sod2,LOC102787761
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42333425 ~ 42336643 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU8918
tttaaatgacttttaaTCAGATATcacattaccaaaaaaaaacaaaaaacaaagcatctcTTTCCATGTTTCAAGCTGCCTCGATACATTCAGGTAGAAAACACTCCGCTCTGAACACAGGATCTAGAAGAGCATTCATTTCACCAGCCTTGCCTTCTTTAACAGAGCCCACtaagtgttgtttttatttaattgaatctgCCTCTTGGTAAAGCATGTGGTAAGGGGTGCTTCACAGATGAAAGCATCCTCTTTTAGAGCTCATAGGGTCTGACAGTAAGTCCAACTACTTCTTTGCAGCTTTCAGCCTCTCTGCCACATTCTCCCAGTTCACCACATTCCAGATAGCCTTGACATAATCAGGCCTAACATTTTTGTACTGCAGGTAATAGGCGTGCTCCCACACATCAATTCCCAGCAGAGGAACAAGACctGTGGCCTGGAGAGGATCCTGGTTGGCGCAGGCTGCAATTCGTAACCGTCCGCTCTCCTTCTCAAACCCCAGCCAGCCCCAGCCGGAGCCCTGCACCGCCACCGTCGCCGCCGACATTTTCTCCTTCATTTTCTCAAAGGAGCCAAAGTCACATTTGATGGCTTCCAGCAGCTCCCCTAGAGGACAGGGAAAGCATGATTTCCAATTGTACTGGTTCCACTGAAAATTTCAAACCGAACAGGCTGTAATTTGTTCTATACCTCTTAAGCTTTCCTGCATTTTTATAGCCGATAAGCTAAAAATGTTAAACACTTGTAGTATGATTAAACCTTTGGAATCAGACGCTGGCCAGTGACAATTAACCTGTTGGGATCTGATACTATTATAAATACTATTAAAGCCAAAGGACCCAGAACCATTTCACTCAGAGAAATAATTAACAGTATCAATCTGCAACTGAAGAGTAGCAAAATGAGAATTCAACTTGTTCAACATTAACTGTTACAACTTTTACAGCAGGTAGGCATATGCCAATCAAatagtgtggaaaaaaaattgcTAAATATTTTATCACATTCATCTAAggtcaatattattttatgaacatACCTTGTGGGTCTCCTCCAGCACTAGAGGAAAGGTTAGTCCAAAAAATTGAATGATTGATGTGGCCACCACCATTAAATTTCAGAGCAGGCTGTAAAGCAACTTGTGCTGTAACATCACCtgcaagatatttaaattaaccagTTAGAAGAAGTTCATTGTTTGGAAAGTGACCTTAAACAGTGGTCACTCTGAGcagttgtaattaatttaacttattaTGATAAagtattacagtatttacaaatgtttaattatttaaatgtgattgtattattgaaatttaaatacatatgtatatcaAGAAAACATTTAGAAGACTGCAGGGctccacaacaacaaaaaaggggaagttaaataatcacacaaaataaGTACTTTTGGCTGAATACTGGGAGCATTACACTAAGAAATCTATCCATGTCAGTACCTGGGTTGTTTCCAGAACAGTCTGGATTTATTTAGTACACAAAGGACCTTTGACGCAGTCCGTGCATTGGTGCTGGTCCTTACCTTTTGCCAGCGCCTCCTGGTATTTCTCCTCGGCCACATTGAGGTTGTTGACATAGGTGGCGTGGTGCTTGCTGTGATGCAGCTGCATGATCTCTGCGCTGATGTGTGGCTCCAGCGCCCCATAGTCATAGGGCAGGTCGGGCAGGCTGTGCTTCTGCCTGGAGGCCATGCAGCTCACAGCTGGACTCAGGGAGGCTGCGCATCTAGGgccaaacacacaaactcacaccaTGGATTTGAAATCGATTGATCCACTTCAGCCAGCCTGTATACAGAAACTGTTACAAAAGAAACTCAAAAAAAGTCAAGATACACAATTCATGAATACTGAAGCAGTTAACAACTTGCTTCTCTTGAGATAAAGCTTTGATTTAGCAGATGTAAAATTCATACTAAGATGTTTATCTTAATttgagacaaacaaacaaagacaaagcttgtaattacatttactaATGGTACTAATGTTCATTTGATTCAGACAGCACTGCTTTAAATAGGCCTAGGTTTTTGTCACATGATGTTTTAACGgagtaaataaaataaccacaCAAAATAAGGCCTGTTTAGGAACAGTGTACACGTTTACAATTAGATGAAATGCCCAGCACTATCACAATACAGGGTTGCTTGTAATCGGCTTTGCACAACACAGAAACTGCGTATCTTTAACAGTACAGATCATGTTCACTTTGTCAGAAGAGAGAAGACGCAGAAACGCCATGTTCACGTTCATGTCAATGTGTCCATCCAGGTCTTAAGGGGTGGTGCATAATCAGTATGAAAAAGAGCCTAAAAACTGCAAACTGGCTACAGTAATTGTAACGATAGTTATATAACCGTCTTGCAATATGTCGTGCTTATTTCAGTCTTCCTAAAAACAAAGTGAACACGCAAAGTACTAACAACACATTAcatgtttataataaaataagaagtaGATACTCTGACGtgagttgttgttattattattattatagcataCTGTATCTTACCAAACCCTGCTCGTTCTCACCATGgatattgttaaataaagtaACCAAAAAGATTGAGCTCTTTTGATATCTATGGTGATTTCGAGATCTTACCTGCGTATGTTACTGGCTCTACACAACATGCTCGCTTATTAACACTTAATCAATAGTGTCGGTATTTCAGTAGCCCTCACTAACACCAGCAGCGTCCTACACAGTATGGCTCTGTTGAAGTTTATGATCTGTGACGCACACTGCCTG

Function

symbol description
sod2 Enables superoxide dismutase activity. Acts upstream of or within several processes, including neutrophil homeostasis; removal of superoxide radicals; and response to methylmercury. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in several structures, including digestive system; hematopoietic cell; musculature system; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); autoimmune disease (multiple); lipid storage disease (multiple); liver disease (multiple); and optic nerve disease (multiple). Orthologous to human SOD2 (superoxide dismutase 2).

NR:

description
superoxide dismutase [Mn], mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8918 True 2787 lncRNA 0.40 2 42333425 42336643

Neighbor

gene id symbol gene type direction distance location
AMCG00004305 NA coding upstream 73684 42220020 ~ 42259741 (+)
AMCG00004303 NA coding upstream 235103 42089871 ~ 42098322 (+)
AMCG00004300 NA coding upstream 249583 42069528 ~ 42083842 (+)
AMCG00004301 NA coding upstream 268014 42047643 ~ 42065411 (+)
AMCG00004298 LOC104961504,LOC106608390 coding upstream 288334 42029377 ~ 42045091 (+)
AMCG00004309 wtap,LOC105015380,LOC100196682 coding downstream 1871 42338514 ~ 42347082 (+)
AMCG00004308 acat2,LOC107696107,LOC107726488,LOC107732634,LOC107601581,LOC107693222,LOC107549121,LOC102788057 coding downstream 13588 42350231 ~ 42355400 (+)
AMCG00004314 NA coding downstream 211697 42548340 ~ 42576558 (+)
AMCG00004315 NA coding downstream 255223 42591866 ~ 42634968 (+)
AMCG00004318 serinc1,LOC107598085,LOC107716862,LOC107675084 coding downstream 396173 42732816 ~ 42736569 (+)
G7231 NA non-coding upstream 243772 42087791 ~ 42089653 (+)
G7221 NA non-coding upstream 265700 42065497 ~ 42067725 (+)
G7182 NA non-coding upstream 367192 41966014 ~ 41966233 (+)
G7101 NA non-coding upstream 726666 41605110 ~ 41606759 (+)
G7102 NA non-coding upstream 804117 41523053 ~ 41529308 (+)
G7278 NA non-coding downstream 28225 42364868 ~ 42365654 (+)
G7288 NA non-coding downstream 39982 42376625 ~ 42379961 (+)
G7293 NA non-coding downstream 138933 42475576 ~ 42475886 (+)
G7418 NA non-coding downstream 899175 43235818 ~ 43237653 (+)
G7441 NA non-coding downstream 1009707 43346350 ~ 43346959 (+)
AMCG00004304 NA other upstream 117063 42210430 ~ 42216362 (+)
G7094 NA other upstream 826194 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 1992190 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 4485705 37832623 ~ 37847720 (+)
G6369 NA other upstream 5333267 36999357 ~ 37000158 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 352136 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 2281542 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 3625367 45962010 ~ 45968306 (+)
G7999 NA other downstream 5810245 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 6560474 48897117 ~ 49026355 (+)

Expression


Co-expression Network