G7288


Basic Information

Item Value
gene id G7288
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42376625 ~ 42379961 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU8939
CCTTTTCACAATCggagtttatttgtatttacaggaGTTTGAAAAAGtaacagaaatagaaaaatagctaaaactaattaaaaatagataGATAACGCTGAACCCAAGCAAAACCACTGGCGCTCTTTTCAAGGAAGCTTGTACAAAGAGTATTGCCTGCAGCGGTGTAAGACAAAGGCTTTCTTTAACGGTCCAAATACATGTCAATAAATATGGTTTGCCATacgcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggcctgttCGGGATTCAGACCTATACTAtatcctgtatatatataagaactGATTCAGAATTCATAGTATCTTATTTACAGGCTGATAGCACCACCAAATATACAGGGGGCAGAGAACCGCCACCCTGACGTCTGTGTTCCAGGTGAGCCGTGTTCGTTAATACAGAGGGGAATCAGTTCATGCAACAATgttcttttcaattatttttgttttcatctggaACAGTACacacattgtattatataaattgaCAAGAAATGAAACCGGGCAAAAAACAGCCTAAACACAGTAGAATTAAGTGGTGATTTTGAAGtatttcattgattttttttttttgtataggaCTCTTTTCTGTTCTCTTTCCAGTGTACTGCACTAGAAAATAAGCTCTCTCTATGACTGACTTTGGGGTCCATTTGGAAAGTGGTAATTCGGCAGTTTCACTTCCAGCTGGCACCAGAGGACATTCTCAAATCAATAGTGCATGTCTGCAGCCCATAAGAGTGCATTCTGGGACTCTACCCACTGGCTGCCACAATGCCGCGCTATATGGATTATGAAGACAGACACATAAAGGcagaaaacatacaaagaaataataatacttcatttaaaaagcatagGAACATATTAATTTGCCTTAACTGGTAACTAAGAACATGATATATCATAAATTCACTTAACAAGGACGGAGCTAGAACAGTGGGTCTTGGCTTCAGCAGTGGTTTGAATGGTCCAGTTTGCTGGGGAGCCTGTTTTTGCTCTCCCTAGAGTGCACACCTCATTGTAGAGGCTCAGAGCCAGCATGCAGGTTTTGGGCTGTGCTGGGAACTCCCCCCACGccaacccccccaacacacagtaTCTGTCCTGTAGCTGGAGCTCACTGGGTGGGTCAGTCACTGATGATGACACTGAGCACCCGttctgcaacacaaaacaacaacagaaatacaaacaagaaaacacaagaaCTGAAATCTGGAATGTTGAGAACAGCATTGTCTTCTGGCTCGTCAGACTCACAGTATCAATCCTGCgctgtgtttctgtgaatgTTCTCAAGGGTGTGTCCACACGTTtacacattcacagacacacatatgtACAGCGACACTTGTattagtatgttttttgttctattttttttttaagtcaccaGGCCTAGCATATTAACATCAAAAGTGTGTTATATATCTACTCACTGACCACCTATATCTTTAATGAATTTTGGAATAATAGATTGAAAAATTCAGATAACCGTGTGACTATCTATATATGCCTAAGACCCACTCCAAGTGGAACATATCGCTTTGATCACACCACACATCTGTCTTTGGGTCTTGAAGACATAATTACAATCTGATacttaacaaatacattacataagaacagaaaagggaaatgtaacaatatgtaaaaaaaaaacaaaaaaaaaaacagaatattgacaattacagtaaaatgtttcCCTCCACAAATTGGAGGACACTTTTTACTTCCTCAGCAATTTAAGGAAAAGCTAATGGATTCCAAATCACTGGATAATACCTGCAAGTgttcagataaaaaaacaaacaaacaaaacaaagcacaaatatGGACTAACCCAGCTCTGAATCAGAGAGAATGCAAGTCTTTGATTTACAAACCTTTTGTGGAAAGTCCCTTGAGGAGAAGAGAAGCAAGAAATCTCTACAAACGCTGCTCTATAGTTCTTTATGGGATCGTGCCACCCACTACACAAAGCACAATACTTCAGCCACatcacatataaaatacaaccCAAACTCTATCACACATCACATTCCCTCTGAACATGTACTATTAATAATGAGCATTACAAAGATGATCCTTTGTATAGCTGTAAGAAAAAGGCCCACTTACACAACATATTAAATCATGAATTAACTATAAAAGAGTAAACACTTTTACACATGGTAAAAATGGCCTAATGGTCATAGAaatctacatttgttttccatttgtcatTACACAAGATGTCCTAGTGAAGCTCACTTGTCACAGAACACAATGCACAATACTTTAGTACACCTGTTCTGGTCCTCTCTCTTTTATTCAGACTTGCTGCAgatatattcaaaacatttgatttaaggAGATACAAATAGgtggaaatgcattttctttcacactAATTTTCTTGTAAAGGGTTTTTAAGAACTGAAATGAACAGTGTGCACtagtgcattgtgttgtgtgtaggGAAACTCACCATGTGTACTTGTTTGCTGTTGAGAAAAAATAGGGAATGAAAGATACTTGCTTTAATTATCTCTTTTTAAAAGTAGTCCTGGCACTTAGTATAAATTCAGCTTcagaaaagaggaaaacaatgaatatacataatatatatttgagtttGATGGAAAGGATTTCACACTGTGCCAACTATGGAATGGTTGGTGGGGTTAATACTCTGCTTGACCATGTGGACAGTCATTCATAACAGCAGAATGGCCATCAAGTCAATGTCTACTGAACAGACTGatactccccccccaccctgacCCTGTAACTCACTGTCTTTTCAGAAGGCCAGACCATGCACAGACTCGCATGATCATTATCTCGAATGGCTATTGATGACAGCGGCACTTTCTTCTGCACAGCCCACTAATCAGATGCAGCAGAGGTTGCTGAGCTCCTGCCGAGTCATGGTTGCGATGCTTGGGCTACAAAGCGAAAAGAtccttctgtctttttttttaatatcgaAAAATCTTGATCCCTAGCAGATGTTGAATCGTAACAATGCCATTATCAGCCTTATAAGCCTGGTTACTTTACACTCGTATCAAAGCAAACGCCAGCTTGGAGATAAAAGAACAGGAGGAATGTGCCAGACGAGGGCAGTCTTGCGTCTTACTTCAGGTCTTCTCCAGTCAATTCAGTAGCTTACCGGAGACAAAGCAAAGTCCAGTGCATTCATTTTAGTCTTTGAGGTTAAACCATaggatctgttttttttcttctttaaatcagtttataagacactgtattattttaagacatctaagaaagaagaagaaaaagaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8939 True 3337 lncRNA 0.52 1 42376625 42379961

Neighbor

gene id symbol gene type direction distance location
AMCG00004308 acat2,LOC107696107,LOC107726488,LOC107732634,LOC107601581,LOC107693222,LOC107549121,LOC102788057 coding upstream 21225 42350231 ~ 42355400 (+)
AMCG00004309 wtap,LOC105015380,LOC100196682 coding upstream 29543 42338514 ~ 42347082 (+)
AMCG00004305 NA coding upstream 116884 42220020 ~ 42259741 (+)
AMCG00004303 NA coding upstream 278303 42089871 ~ 42098322 (+)
AMCG00004300 NA coding upstream 292783 42069528 ~ 42083842 (+)
AMCG00004314 NA coding downstream 168379 42548340 ~ 42576558 (+)
AMCG00004315 NA coding downstream 211905 42591866 ~ 42634968 (+)
AMCG00004318 serinc1,LOC107598085,LOC107716862,LOC107675084 coding downstream 352855 42732816 ~ 42736569 (+)
AMCG00004321 NA coding downstream 547107 42927068 ~ 42975785 (+)
AMCG00004326 NA coding downstream 733723 43113684 ~ 43114271 (+)
G7278 NA non-coding upstream 10971 42364868 ~ 42365654 (+)
G7272 sod2,LOC102787761 non-coding upstream 39982 42333425 ~ 42336643 (+)
G7231 NA non-coding upstream 286972 42087791 ~ 42089653 (+)
G7221 NA non-coding upstream 308900 42065497 ~ 42067725 (+)
G7182 NA non-coding upstream 410392 41966014 ~ 41966233 (+)
G7293 NA non-coding downstream 95615 42475576 ~ 42475886 (+)
G7418 NA non-coding downstream 855857 43235818 ~ 43237653 (+)
G7441 NA non-coding downstream 966389 43346350 ~ 43346959 (+)
G7485 NA non-coding downstream 1211789 43591750 ~ 43595078 (+)
G7569 pvrl1b,nectin1,LOC107563312,LOC107758086,LOC107691861,LOC107670612,LOC107561861 non-coding downstream 1698384 44078345 ~ 44088037 (+)
AMCG00004304 NA other upstream 160263 42210430 ~ 42216362 (+)
G7094 NA other upstream 869394 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 2035390 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 4528905 37832623 ~ 37847720 (+)
G6369 NA other upstream 5376467 36999357 ~ 37000158 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 308818 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 2238224 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 3582049 45962010 ~ 45968306 (+)
G7999 NA other downstream 5766927 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 6517156 48897117 ~ 49026355 (+)

Expression


Co-expression Network