G7569 (pvrl1b,nectin1,LOC107563312,LOC107758086,LOC107691861,LOC107670612,LOC107561861)


Basic Information

Item Value
gene id G7569
gene name pvrl1b,nectin1,LOC107563312,LOC107758086,LOC107691861,LOC107670612,LOC107561861
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44078345 ~ 44088037 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU9305
GTTTAAAACAACCTTTAATGGTTTAAAAGCAACGACTGGATCCCACCCCAGGACAGTTTCTACAATACTGGATCACAGTTATGGCCACCTCAGCACATATACATTCAGCAGGGTTGCcaatctttgttttaatttcatttaattatacacTTTCATAAAATGCACCACCCACAGCTGTTCGGGTACACAACTAATGTCTCCATCAACAGTACGAAAGCTGTAGTTTAGGGGGTCTAGGGGGTGTAATCTAAAACTTGCCAATCCCACGTTTCCTATTTCTATCCAGTCCCCTGGTACTGGTAGGCATGGCAGGATGACATCCCTATAGCATGATATATATAACAAATCATAGTTAGAGTTTTTAccacatatacattatatacagtggaATGTTAAGCTCTGATTCCAGAGTGTGCTAAAGCAATTTAGCAGACATATGACATGGAATTCTAATCGGAaatttaaaactggaaaactgcccccaaaatatgaacaaaataaaaaagtataacaagaaaacaagaaaagaacagaaaacttTCAGGTTACACATCGTTCAGAACCTAACCACACAGAGTCACCCACAAGAGATCGGGACTGATAACACACCTGCTTCATTCATAATTTCATACACTCAGCAAGGACATCTATCTAAGGGACAACACTGACACAGATTGGGACAGCTGGCTTGGACTAGTtcaaaagtgtgtttttaatacttttaaaatgtctgctgtAAAAGAAGACGCTACTGATAGCATGTCCTGAATCCACCATCATGAGCAACTGGTTTTGTTGCTGTAGTCTTTCTAGTAgcagatttttatttgaaatacatcttGTCCTCGTTGATTCTGTTCTGGAATACCAGACCTTATGtgattcaataaatacaagaggGCTCAGAGTGGAAAGCAAGTCACAGGAGAATTGCGATTGCCTAACCAAAGTTCCCCCATTGCCAACAAACACAGTCACTTGCTCTGCTTTCTCTTTAGGCAGCTGTCCTGCTCTTGCCAGTAAATCCTTTCTCTCTCACAGTCTCATTTTATTTACTCTTATAAGAAAGATCCGGAAACACAACGTGTAGTTGCCATACGGATGCTTAAAGCTTAATGATAAAACTACTCTAGTTTCTAGTCAGGGTTGAGACTCCCGTTTCTGTCGATTTGCAGATGGCTCTGCCGAGTATCCGTGGTGCCAAGAAAACCAAACTGCACCACTGCCTATCTCCCTTGTATCTTCACCTGCTAGTTTACAAAAATGGTATTGAGCATTCAAAAGCACTGGGCTGCCCCCCGGAGACTCCGATAAGGGCTGTGATTTGATGATGCTTTGAGGTGGAGCGTTTTGTTTTGCATGGGGCAGTTCCCAGTGAGTCACACTGCAGGTTGATCTTTTGACAGGGATAgttttatatttcctttccattgtaaggacagagaggaaaaataatacatctacCTTATGGCAGAGACACGCAGGGTCCACAGTCATTGGTGCATTGATCTGTGTGCATCTCCTACTCAGGGAGGTACAGAAGTCCCGGGAGCATTGAAAATAGAACCTGCACATTGCACCTGTTTTCTTAAATAAGGGGCAGCACTAACTTCAGTTTGCAGGACCACAGTACTGACTGGTGATTAACGTCTTTAAAAACTGCTGGCACCCATTGTCCCCTGCCCAACAGCAAAGACCTGCAGATGAGCCTTACAATGCTTTCAGGTGTTGAAATCAGTGAGTGTCCCGATAGTGACGAACTCTGGCACTCAGCTAAATCCTTTTCCGAGTGCGGTCTTCAGATCCAGCTCTGAGGCGAGCAGCAGAGAGAGCTGCCTCTTCAATCCGAGCCACAGAAACCGATTGATCACCATGGCTGAGAAACTGAGCAACACAAGttaaagcaaaactaaaacaagaaagaaagaaagaaagaaaacacaaaacaaaccaagtagcatatatatatatatatatataattttttttgctttccagTCAGGCAGGTTTTTATGTCCTTGTAtgaagtttttttgtttctgtattgttgtattcctccctctcttttgGTTTCCTGTTGCATCTCTTGTTCGTTTTAATGAGAGTCTCCTCTGGCTGTGTGCAGGTCCTCTGGGAATCCAGCAAGGCACTGTGGAGAGAACGTTTTGCATTGCAGCTCCTTTTCCATGGTGGGAATCATCTGACAGGCCTCTCTCCCCTGACGGGCTGCCTGCGCTGCTGCCAATCCTGCACTCCCAGAACCGTGCAGCTGCCTTTGTGCAGGACCGCTCCAGAGTGACGTGCAGGCCAGGAGAAGGGAGAGGAAAAATGAACCTCTCCCTGCTACGAGATGCCATGCAGGCATAACTCAGTTCCATTTATGCTTCTCTCTCCTGTGTTGTGTGCAACAAAACAGCCATGGCTATCAAAACAGctgcctgtgtctctgtgtttgcatGTCCTCAGCATCCTCCAAAGGCCCCGCAATGGGAGGTGACAGCTGCTGATAGAAAGATCTGTACTATGTGCCATCAGAAACAGAATGGCAGAATGGGGTTGTTTCAGATGTTGTGCTTTCCCTAGcaggatttaattaaactgtcacatatatatatatatatatatatatatatattgtatataggtacgtatacattgttttttagttGGACAGGTAGCCTTGCTGAACATAACCAATCCAAACACATTACAGTAGATTCAAATTGTTCCATTGTCACTGTCCCTTACTTTTAAGCAattgattaaaaagaaacaaattaaaaatatatttatacaggcaatgaaagcaaaatgtattctgattACAAAGCAAACCCCTGCACccatctgtttttgtgtgtctgcttGTTCGGTGTCACTCCTTACATACGGCATGCTGAACAGAGGAGTCGTTACAAAGCCTGTTCAATTTTAAGCATGACAACAGCCATGGACATTGGGAACATTGTTGAAGCAATATGAAAAATACTGACATTTTCATGATGCAgataaagagagaaataaaggcACTTCCCTCTTTCCCATCCAGGGCTTAGCTCAAGTGGCCAGATCCTCTGGTTAAAACGAACACATTctgtgtccctccctccctcccagcaGTGCTACACATGAGAAGCCACTGACACAAAACTGGATAACACAAAATACTCAACAGTGCTTTTAATGTAAGCATCTcaaatgttgttcttttaaaCACTGATGCTGAACCACAGAGTGGGGGTGGTTATGATTTGCATTTCATATATCTTTGGAAATTTCGTTTTCAAGATTGAAGAGTCTTGGATTCTACAAGCCTGACCCCctatacagtatacaatacaCAGTAATGTAATACATTCCCAGATCACGATTCTCTACATGGCGATCACTGGTGTGGTGGGACAGGGGAGGGAGTGGGATATTCTTTATAAGATTGTGTTTGGAGGAATGATCTgatgctttttttattaaaacatcagTCAACACTGTTGGCAGACAACTCAAACAGGACTTGGTGAACCTTTCAGAAAATCTGACCACCCGTTCAGCTTTAAAACCCCTCAGCCCAAAAGTACCGTTTCCCTTATGCAGTTTCTGAAATATAAGGTAACAGCTAgctagaattaaaaaaataaaataacaaaaaacaggtACAAAAATTAtgataacaataaaaatgataataaaaaataaacctcatAATCATACATCCAGTGTAGGACTTTCACAATACATCCccccaaaaacaaactttaaaatgtagagcaaaatctctctttttttagttttgtgtttgtttctttgtttttacatagttcgtacatttatattaacatgataaagaaaataaccaaaaaaatatataaaaaaaatcacacataaaatacagttaTTAACAAGCAAACTGCCTTCTGGCCTAAAAAAAGTCAATGACAGTTGGCATCAGTCCTTGGAtacaccttttttttaataagcagaaGAATCTTTAATAGCATCTTAAAATATCATGATGAGGTGTTGTCAAGTAGATGTTGCAAGCTCTCTCAACTCGATGCTTTAATTTCTTGTTGTTTACTTGATTGAATGCGTTCAGATGGGGGATGTTGGGCAGGGTTGAGGAATGGGTTTGGAGAAGCGATGGGAGTGAAGGGAGGTCAGGCCAGGGGAGTGTGTTAATGAGTGTGGGGGGTCAATGGAACAGGAGGGGGGGTTGCATGCCGCTACACGTACCACTCCTTCTTTGAAATGACAGAGCCGTCGGTTTGGGAGACCATGTCGTCGGCAATCTCGTGCTCGGGGTCGTACTGGAAAGCCAGAGTCCGTTCGTCGAAGTCACGGCTCTCGCCTTCATCCACCGTGAAGTAGGGTCTCTTCAGGTCCTCGGCATCAGGGTCGAAATCCCGATCGCTGCCCTCGAAGCCGCCGGGTCCCCCGACGGGCGCAGGCTTCTTCTCGTCGTCTGAGTCCTCGGGATACTGCAGGTTCTGGGGCAGCGGAGGGTGTGGGGGCAGCCCGCCGGCTTTGCTGTAGCCGTTTCCGAACACGTGCTTCTTGGTACTGTAGTCGCCCTTGAAGGTGCGCTGGCGGCGGCGCAGGAAGAcgaacagcagcacagcagccacGCCCAGCAGGACCACTCCCCCCACAGCACCCCCGATGGCGGCCCCAGAACTGCGCTCCTCCGCCGGGATCTCGCGCTCGCTGGGTGGCGGGATGTTAGGGAATTCTGGGTAGGAAAAGACAGATGGAAGgggacagtgtgtcagtgccccAGCgagaggaggtgtgtgtgtttgtgtttttttattttggaaagatGAGGGAAGGGAGACAGGGAAGGATAAGCAAAAGGGAAGGTAGTACAGGCAGGAATCCCCCTGGC
>TU9307
tgCCTGAAATTTTtcacctttatttaaaaaaagagcatTTAATACACATCAGTCTTCACAGACTTTTCACCACGATtgtaagtttttgtttttacaggatTGGAAGATTCTCTCCCACAGTTCCAAGCACAGAGGGGAgattcaaacacaaaacacaggagGGGctggaataaaagaaaaattaacCAGGCATTggacatgaatatatataaaaaacaaacaaaccaaaacgaaaagtgacagaaaacaatgaaaaaaaacagtaatttataaaacaaacaaaacacagtacagGTTACAAAATGCTTATTTCCATAGATTTTCTTTGTCACAATAAGTACAACATTTGTATCACCGAGTCTTGACTATGGAAAGCCTGCGCAGCTGCTCTCTTCTGTGCAGCTAATGTGTTCCTCTGACAGTAAAGCTGTTGGTCACACCTACAATCACATTTTCCATTCTCCCGGTGTCTAACAGCCCTCTCCATTGCTCCAGCCAATTCAGAGTATTCTTTGTAAGGCTTCATAATGGCTCACACACTTTTAGCCCACTACAGCCCATTACTCCCACGCTGAAAAAAGTCACAGCACTATACGAGAACAAGATGCTGTTTCTGATACTGTTATAAAGGACTGGACAATACTGGACCACTTTCCTCTGTCTGTAACTAAACTGCAGTCCCTCGGACAGGTCTATTGAGCAAACCCTGGGGTGGTGGAGAGCAAAGGTCACTCACACAGTGAGAGCCCCCACCATGCTTTTCAGAGCTCCATTGTATTATGTGGCGAGAACATGAGAtacgaggaggaggaagaaccAGGTGGTGACATAAGTGAGAAAAAGAGATACAAATAGCAGATAACCGATTCAGACCATACTGCCTTCATCCTTTCTGTATGCTTCCCTTATCACTGAAGATTTGTGTTTGCTTACACTGGGGATCAAAGATGAAAGAACGTTCTAGATTGGAGGATAAATGCTTCCATGAAAAAAGTATTGATGAACAATGCAAATACATCATAAGGTAggaatattataaaaaaacaacaacaacaatgaacaAACCTTCCCTTATCTTTTCCCCTTATCTCTTCTTGCAAATCAAAACGGGTGTGTTGGCTTTAACAGATACAATTGAGGTTTCAGATATTTTACTGAACAAGCTCTAGCCCAGCCGGTGAAATGTGCTTGAACTGCAGGCCCCCCTGCCTGTGGGACTCTATCTCTATAAGCATCAGCAGGACAGACACATTATAACACATTCTTgacagacacaaaacaaatcttgttGTCAGGGTTGTTGTTGTGCTTGGTTTGATCAAGCTTGTTTGTACCAATGTTATTTTGGGATGTTCTCATGTATAATTGCCCTACCTTAGTGAGTGTACACTTTAGAAAGTGTTTATCCTTGTTTCCTGATTTTCTACCTGTGCTCTAGGCTCTCCTGTATATGGAGCCAGATCAGGCCTCCACAGACACCCCTCTTTATTGAGAAACAAGACCCTCTATAAAGGCGAGATCTGGACAGGGCTTCAAGGAAACCTGCGAAGATACATTCGCAGAGTTAAACGCTAACAGCAGTGCAGTTTGGTGATATTTGTCTTGAGAGGCCTGCTATCTCTAGCTCTATGGGGAACATCTATTTTCAAGAGTTGGAAATAAACTGCAAAGGTTTGTTTCGATGTGAACCATTCTATTGTTGTCCTTAAAAAGTGTTCAAAAGGCCAAATGCCTGTGAAATACGCATGTCGTTTGCGTCAGTAGCAGAGTGCCGCGTgctgtgtgtgaaatgtgaaaatatatgtgcTGCAGCAAACGCCATGAGTGCAAGAAAATGTTAGATTAAGGTGTGATACAGCTCACAGAAGCCCAGATACCCTTGGGAAAAGTCCCCATTTGTACAATTTTGTTTCAACACTGAAGTTGGGAGAAACACTTTCTGCACAAAATTTTCAAGAACGATGAAACTCTGTACAAGGACTGAATAAAAAGAGGATTCGCAAAAGTGCGTGACAAGTCCTGGAGTCCCAGGTGATTTCACACAAACTGGATAACATCATGTACAATTAAAGGGTTTACTGAATATAAGGATGACACTCATTTATATTCTCTATTTTTTGTGGAAACTATTGGGTTCATTCATATGGAGGCCAGGGCTTCTGTCACTCTGTAGCCAGCGGGTTCAGGTGTTGCAGAGGAACATGTGTCAGTTGTGCAGAGTAACTGCCTGACGTGACACAGGTAGAACACCCCTTCATGGAGGTAAACACGTATTTATATCACTTGTTTTATTCCTCAAAACGCAGTGTGAAATAGATTTTAGTGTTCATATATagattcatttatatatatatatatacactcacctaaaggattattaggaacacctgttcNN

Function

symbol description
nectin1 Enables cell adhesion molecule binding activity and identical protein binding activity. Predicted to be involved in several processes, including heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; homophilic cell adhesion via plasma membrane adhesion molecules; and positive regulation of viral entry into host cell. Predicted to act upstream of or within several processes, including camera-type eye development; desmosome organization; and enamel mineralization. Located in adherens junction. Implicated in cleft lip; cleft lip-palate-ectodermal dysplasia syndrome; cleft palate; and ectodermal dysplasia.

NR:

description
PREDICTED: nectin-1-like isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU9305 True 4882 lncRNA 0.44 3 44083098 44088037
TU9307 False 2395 lncRNA 0.50 2 44078345 44081355

Neighbor

gene id symbol gene type direction distance location
AMCG00004346 NA coding upstream 279870 43795221 ~ 43798475 (+)
AMCG00004343 NA coding upstream 356366 43671020 ~ 43721979 (+)
AMCG00004338 LOC106571388,LOC106607787 coding upstream 446449 43625615 ~ 43631896 (+)
AMCG00004342 gopc,LOC106607787,LOC107603060,LOC107678854 coding upstream 467250 43610781 ~ 43611095 (+)
AMCG00004335 NA coding upstream 543687 43526980 ~ 43534658 (+)
AMCG00004351 NA coding downstream 322562 44410599 ~ 44411051 (+)
AMCG00004354 NA coding downstream 410391 44498428 ~ 44498907 (+)
AMCG00004353 NA coding downstream 423810 44511847 ~ 44512326 (+)
AMCG00004352 NA coding downstream 461395 44549432 ~ 44552133 (+)
AMCG00004367 LOC107691633,LOC105921217,LOC103395053 coding downstream 619976 44708013 ~ 44711574 (+)
G7485 NA non-coding upstream 483267 43591750 ~ 43595078 (+)
G7441 NA non-coding upstream 731386 43346350 ~ 43346959 (+)
G7418 NA non-coding upstream 840692 43235818 ~ 43237653 (+)
G7293 NA non-coding upstream 1602459 42475576 ~ 42475886 (+)
G7288 NA non-coding upstream 1698384 42376625 ~ 42379961 (+)
G7584 NA non-coding downstream 248414 44336451 ~ 44336681 (+)
G7614 NA non-coding downstream 442303 44530340 ~ 44543143 (+)
G7638 NA non-coding downstream 486294 44574331 ~ 44574997 (+)
G7644 NA non-coding downstream 499669 44587706 ~ 44587984 (+)
G7662 vps11,LOC107588528,LOC107578557,LOC107691631 non-coding downstream 528279 44616316 ~ 44617399 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 1387236 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 1861983 42210430 ~ 42216362 (+)
G7094 NA other upstream 2571114 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 3737110 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 6230625 37832623 ~ 37847720 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 530148 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 1873973 45962010 ~ 45968306 (+)
G7999 NA other downstream 4058851 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 4809080 48897117 ~ 49026355 (+)
G8099 NA other downstream 4844413 48932450 ~ 48934095 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013027 nectin1b coding NC_007129.7 CM002902.2 42970208 ~ 43226503 (+)
grasscarp (Ctenopharyngodon idella) CI01000028_04128511_04130775 NA coding CI01000028 null 4128183 ~ 4130922 (-)