RNA id: TU9559


Basic Information

Item Value
RNA id TU9559
length 1964
RNA type TUCP
GC content 0.48
exon number 3
gene id AMCG00004380
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 45962010 ~ 45968306 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGTCAGTCACGGTGCTGTGGTGAAACGGCGGTTACCAAGGAAGCCGAGGAGTAAATCAGGTTACGAGACACGGACTCGGTTTCTGAATGCGTCCGCTGACGTCGCACACGTGTCCGGCGCGCAGGGGTGCGGCTGCTGGTGCTGTCCATGCAGAGCGGCATGTTACAGCTTAGGAATTGTTTCTCCCAAAAGTCACAGCAGACAATCAAACCTGCGAGAGTGAACGCGAAGTGGGTCAGCTGGCACGATTACACTATTTCCTGTACAGCGGATGTGATTGTTCGTATAGTCCCTGGCGTTTTCTTGTAATTGTGGCctgtgtttctttaattagaGGACAGCCCGGGCATCTTGTATGTTTCCCGATTCCAATCGCTTTGCCAGCGCATGTAgccaatgcaaataaaacatggcTACACGGGACTTAAAGAACTCCGCGAGCACAGGGACGACTGCGTGATGCTGGACGTGCTGCAAACACGACTAATTGCTTTGGGCACTTCGTGGTGCAAACGGCCGTATTCGCCCTGTTTTCACACAAGCCGTGCGAGGAACCGCGTTTGCACCGAATCCCTGCAGTTTACAGACAAGCTTTCACAACACAGGACACCGGTCTCATGTTAatgatgttttaatgtagatGCACCATCCCTttcatggtttattttgattCTGCGTGtttcttgctttgcttttgcacgcttgttttcttttctggtcGGTTGGCACTTGAGCCAGCGTGACTGTGTATCCGCCCCAGTATCAGCGTGTGTTTTGACGGCACCCGTATCCGGGACTCACCCTGCAGCTGCCCCGGTGGCTCCAGCCCTCCTCTCGGAGCCAGGCGGCGGTGTGGCCCGGGCGCGATGGCCGGGACGGTGCTGGGCGTGGGCCCGGGGGTGCTCCTCATCGTGCTGGTCTGGATCGTGGCTCTGGCGCTGTGTTTCCTGCTCTCCAGGGCTGCCGGGGCTGCCAAGTTCTCGGTCGTGCCCGTGTTCCTCCTCGCTCTGGTTATAACGCTCATCCTCATTTTCTTCCCGCGGGCCCCAGAGACTGCCTCACCTGTGAAAGAAGTGGTGATCGTAGACACATTTTTCATCGGCCGCTATGTCCTACTGGCATGTGCTGGGGTCATTTTCTTGGCCAGTCTGTTCACGCTGCTGCCTCTTCATGTCTTGGAGCCCATCTATGCAAAGCCTCTGCGCACACACTAGGACCTGGACCCAGGTGGGGTGTGGGTGGGCAGGGTTGATACATGCAGTGCTTCTTTAAGCAGGACACAGCAGGAAGACCAAGGACCAGCCACGCCCACCCTGTCGATGACTTCTCACACATTTGTTCTGGAGTTTGTTCTACAGTTATTAttaaaaggttatttttaaaaaaagggcAGAATTGAAGACTTCACACTGTAAGAGGTCTTCATTTTTTAAGACGTATATTAATACTTAGATTTCTCTTAGATTTTATTACCAGGTTCTAGCAATACAGATcagttctttttgtttttggttgtaatttttttaatatgctttatAAGTTATTactttacaattacaattgtttCCAATCATTCCAGTTGTTGTCAGGAAATGTTTGCTGGTTGTTCAGATTCCTTCAGGGAGTCACCGTCCATGGAGCCCAGGAAGCTGTGTTGTGGATCTCCGATGGGTAGGGGGCAGACTCATTCTGACTCAAACTCGGCTATTACAAGTACAGATCTCCCTTGTGTTTAAATAGTCTGGGGAATAATTAGATtagataattatttttaaatcctgaagAGCATTACGGTGTTTCTTTACTGCtttattttgcagcattttCCACAGTGAATGTAAAGTGTGATATCTGAGAGGAATCCCACATGTTCATATGtgcaagttttgttttctttcagtttatatgatttctgtttgtacagtgttcttaataaaaataaaaataaatgttacttttcAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9558 lncRNA upstream 40205 45919390 ~ 45921805 (+) True G7765
TU9437 lncRNA upstream 1321278 44636305 ~ 44640732 (+) False AMCG00004355
TU9429 lncRNA upstream 1344611 44616316 ~ 44617399 (+) True G7662
TU9408 lncRNA upstream 1374026 44587706 ~ 44587984 (+) True G7644
TU9402 lncRNA upstream 1387013 44574331 ~ 44574997 (+) True G7638
TU9695 lncRNA downstream 422082 46390388 ~ 46390751 (+) True G7879
TU9725 lncRNA downstream 747472 46715778 ~ 46717255 (+) True G7906
TU9730 lncRNA downstream 753523 46721829 ~ 46723088 (+) True G7911
TU9785 lncRNA downstream 1023911 46992217 ~ 46997805 (+) True G7949
TU9814 lncRNA downstream 1679882 47648188 ~ 47648574 (+) True G7974
AMCG00004379 mRNA upstream 102736 45821901 ~ 45859274 (+) True AMCG00004379
AMCG00004378 mRNA upstream 654764 45302565 ~ 45307246 (+) True AMCG00004378
AMCG00004375 mRNA upstream 818561 45125924 ~ 45143449 (+) True AMCG00004375
AMCG00004374 mRNA upstream 865067 45068915 ~ 45096943 (+) True AMCG00004374
AMCG00004368 mRNA upstream 1229411 44714025 ~ 44732599 (+) True AMCG00004368
AMCG00004384 mRNA downstream 13319 45981625 ~ 45999108 (+) True AMCG00004384
AMCG00004387 mRNA downstream 212232 46180538 ~ 46187407 (+) True AMCG00004387
AMCG00004388 mRNA downstream 268051 46236357 ~ 46254391 (+) True AMCG00004388
AMCG00004390 mRNA downstream 317144 46285450 ~ 46289245 (+) True AMCG00004390
AMCG00004389 mRNA downstream 332546 46300852 ~ 46319307 (+) True AMCG00004389
TU9000 other upstream 3270901 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 3745648 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 4454779 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 8961852 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 9070264 36861547 ~ 36891746 (+) True G6328
TU9841 other downstream 2178582 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 2964144 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 4182958 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 4775485 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 5146635 51114941 ~ 51115262 (+) True G8606

Expression Profile