RNA id: TU9814


Basic Information

Item Value
RNA id TU9814
length 387
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G7974
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 47648188 ~ 47648574 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggagctgaaggttcaagttgccaaacgtcagcctcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcgaaggggtcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgcgtttttctggatttttttgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaatacttttttccctcactgtata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9785 lncRNA upstream 650383 46992217 ~ 46997805 (+) True G7949
TU9730 lncRNA upstream 925100 46721829 ~ 46723088 (+) True G7911
TU9725 lncRNA upstream 930933 46715778 ~ 46717255 (+) True G7906
TU9695 lncRNA upstream 1257437 46390388 ~ 46390751 (+) True G7879
TU9558 lncRNA upstream 1726383 45919390 ~ 45921805 (+) True G7765
TU9817 lncRNA downstream 36946 47685520 ~ 47685881 (+) True G7977
TU9898 lncRNA downstream 814607 48463181 ~ 48468811 (+) True G8044
TU9944 lncRNA downstream 1198952 48847526 ~ 48848126 (+) True G8083
TU9954 lncRNA downstream 1248543 48897117 ~ 49026355 (+) False AMCG00004421
TU9955 lncRNA downstream 1248543 48897117 ~ 48978632 (+) False AMCG00004421
AMCG00004399 mRNA upstream 755249 46883862 ~ 46892939 (+) True AMCG00004399
AMCG00004400 mRNA upstream 765276 46869325 ~ 46882912 (+) True AMCG00004400
AMCG00004401 mRNA upstream 850540 46793387 ~ 46797648 (+) True AMCG00004401
AMCG00004395 mRNA upstream 945761 46688600 ~ 46702427 (+) True AMCG00004395
AMCG00004396 mRNA upstream 966220 46669974 ~ 46681968 (+) True AMCG00004396
AMCG00004405 mRNA downstream 675551 48324125 ~ 48330895 (+) True AMCG00004405
AMCG00004406 mRNA downstream 702287 48350861 ~ 48355175 (+) True AMCG00004406
AMCG00004408 mRNA downstream 724696 48373270 ~ 48392816 (+) True AMCG00004408
AMCG00004407 mRNA downstream 779842 48428416 ~ 48443267 (+) True AMCG00004407
AMCG00004404 mRNA downstream 797154 48445728 ~ 48452697 (+) True AMCG00004404
TU9559 other upstream 1679882 45962010 ~ 45968306 (+) True AMCG00004380
TU9000 other upstream 4957079 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 5431826 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 6140957 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 10648030 36999357 ~ 37000158 (+) True G6369
TU9841 other downstream 498314 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 1283876 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 2502690 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 3095217 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 3466367 51114941 ~ 51115262 (+) True G8606

Expression Profile