RNA id: AMCG00004431



Basic Information


Item Value
RNA id AMCG00004431
length 1239
RNA type mRNA
GC content 0.51
exon number 6
gene id AMCG00004431
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49519124 ~ 49522913 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTTAGTTGAAGTTTTGGAAGAAGATCTGAAAGCAAGCAAACCACACAGATGCACTGAGGAATCAGAGTGTGGCTCCTCACAGCCCTACAACACTCCCAGCCCTTACACATCTGTGCAGACACCCAAGGCCTGGGTACAGGAGTTTCCTGCACAGCAACCCGCTGTAGAGTACAGTCCTGATGGCAGCATTGGCAGCAGCACCCCTTCACCCCAGACTTACTGCCTCCCCACTGACTTCTCTCCAGCCAGCTCACCAGATGGCTGCGACTACTTCCATTCCCCACCCTATGAGCAGACGCCCGCCCCCTCCCCTGGCTACCCAGGAGGATATTACAGTGACAACTCGGAGGACCTGGTGTCCAGTATGTACCCTCAATTGACATATCAGGTGCCGTCACCACCAGACTCCATCTACCACAGCCCTAAGCCTCACTTCTACGAAGGATACGCAGACAGCCTCGCTGATCCTCCGGCCAACCTCAGCAACCACTATTCCTACAGGCAGAAGCAGGACTGGAATGGGCTCACCTTCTTCCACTTCCAGCTACAGAGGGAAGAGAACCTCATAAGGGGCATCTCAGATCAAGAGCTGCTGGCAGTGGACAAAAAGGGGAGAACAATGCTTCATAATGTGGTGTGTCAGGGGAAAAGAGCCCCGGTCTATGCAATTGCTAAGAGGATGGCTGCTTTGAACAGAATCAATGCCAAAGATACAGAGGGAAAGACGGCCCTGCATCTGGCTGCAGAGAAGAACCAGCATCTAATGGTGGCTGATCTAATCTCCCTCGGGGCCAATGTGAACTCAAGAGACAAGTTTGGAAAGACCTCGCTGCATCTTTGCGCAGAAAATGGATACATCAGAGTACTGGAGTGTGCAGTGATTGCAGCGAACATGGCAGTGAAAGAATTACAGAACAGCAAGACCCACAGTGAGATGAAGTTTCAAAGTCTGCGAAAGGAACAGCTCTTTGAAACGCTGGAATATCTGCTGCAAATCGGAGGGAATCTGTACACAACTGAGCAGCTCTCTGGCCATTCAGCTGTACATATTGCCGATATGGAGAACAATCCGGAGCTTGTCCACCTTCTCCAGAGACACAACTGTAAACTTGGGAACATTGACGATGAGGATTATGCCTCTCAAACAATGCTGGATGTCATGTGTAATATGGGCAGTCTGTACGAAAACCGCGAGGTGTCAGACCTGCTTCACTGTACACTGCTCAACCGGACCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU10055 lncRNA upstream 83373 49434043 ~ 49435751 (+) True G8167
TU10030 lncRNA upstream 200308 49307845 ~ 49318816 (+) False AMCG00004425
TU10023 lncRNA upstream 271090 49246488 ~ 49248034 (+) True G8140
TU9977 lncRNA upstream 459069 49055360 ~ 49060055 (+) True AMCG00004424
TU9980 lncRNA upstream 489941 49024156 ~ 49029183 (+) True G8111
TU10096 lncRNA downstream 59205 49582118 ~ 49586095 (+) True G8188
TU10214 lncRNA downstream 288422 49811335 ~ 49814024 (+) False AMCG00004442
TU10255 lncRNA downstream 427706 49950619 ~ 49951516 (+) False AMCG00004449
TU10311 lncRNA downstream 543522 50066435 ~ 50068081 (+) True G8356
TU10334 lncRNA downstream 614716 50137629 ~ 50139705 (+) True G8371
AMCG00004427 mRNA upstream 89316 49425765 ~ 49429808 (+) True AMCG00004427
AMCG00004428 mRNA upstream 107557 49403208 ~ 49411567 (+) True AMCG00004428
AMCG00004425 mRNA upstream 200289 49298736 ~ 49318835 (+) True AMCG00004425
AMCG00004426 mRNA upstream 226056 49279160 ~ 49293068 (+) True AMCG00004426
AMCG00004424 mRNA upstream 461490 49043590 ~ 49057634 (+) False AMCG00004424
AMCG00004430 mRNA downstream 24356 49547269 ~ 49571300 (+) True AMCG00004430
AMCG00004434 mRNA downstream 85966 49608879 ~ 49631014 (+) True AMCG00004434
AMCG00004437 mRNA downstream 234208 49757121 ~ 49772253 (+) True AMCG00004437
AMCG00004441 mRNA downstream 274630 49797543 ~ 49804404 (+) True AMCG00004441
AMCG00004442 mRNA downstream 283448 49806361 ~ 49814024 (+) True AMCG00004442
TU9962 other upstream 585029 48932450 ~ 48934095 (+) True G8099
TU9841 other upstream 1371968 48146888 ~ 48147156 (+) True G7999
TU9559 other upstream 3550818 45962010 ~ 45968306 (+) True AMCG00004380
TU9000 other upstream 6828015 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 7302762 42212510 ~ 42216362 (+) False AMCG00004304
TU10340 other downstream 628351 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 1220878 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 1592028 51114941 ~ 51115262 (+) True G8606
TU10780 other downstream 2416648 51939561 ~ 51946818 (+) True AMCG00004501
TU10796 other downstream 2466440 51989353 ~ 52013630 (+) True AMCG00004509

Expression Profile