RNA id: AMCG00004459


Basic Information

Item Value
RNA id AMCG00004459
length 537
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00004459
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50184702 ~ 50187493 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGAGCTGGAGGAGAAGTATAGACGGAGTACCCTGGATGTCACTGTCCTGAAGGAACATCTAGTCCTGCGGAGGGATGTGGCTCGCCAGGCCCAGGCCTGCAGTCAGGAGCTCCAGACCAGACTCAGCACTCTGGAGCACAAGCtgggtgcagagagagaggacaggagggACATCAATGCAGATCTCACTCGGCAGTACAAGACCATGCAGACAGAGATGGGGGTCAAGGTTCACCAGCTGGAAATTGAAGTCAGCAAACTCCAGCAGCAACTCACTCTGTGCCAGGAGgctctgcagagagagagggagtccgGGGAGCAGATGGTGCTGGAGAAAGACGCCACCATCACTGAGCTACAGGGCAAGATAGACAACATGGAGACAGACTACGAGAAGATCCTACACGACACTCTGGACAGCCTCCTGTCTCGCCTAGCAGAGAAACGGCTACACTGGCAGGATGAAAGCACTGAACTGCAACTGGAGCACAAGGAACGGCTGTTAGACTTTGGGCTGAACCCCCTCGATATCTAA

Function

GO:

id name namespace
GO:0046036 CTP metabolic process biological_process
GO:0046131 pyrimidine ribonucleoside metabolic process biological_process
GO:0046132 pyrimidine ribonucleoside biosynthetic process biological_process
GO:0046134 pyrimidine nucleoside biosynthetic process biological_process
GO:0009147 pyrimidine nucleoside triphosphate metabolic process biological_process
GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process biological_process
GO:0006213 pyrimidine nucleoside metabolic process biological_process
GO:0072528 pyrimidine-containing compound biosynthetic process biological_process
GO:0006220 pyrimidine nucleotide metabolic process biological_process
GO:0006221 pyrimidine nucleotide biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0009208 pyrimidine ribonucleoside triphosphate metabolic process biological_process
GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process biological_process
GO:0009218 pyrimidine ribonucleotide metabolic process biological_process
GO:0009220 pyrimidine ribonucleotide biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10343 lncRNA upstream 12751 50171520 ~ 50171951 (+) True G8380
TU10339 lncRNA upstream 35160 50149325 ~ 50149542 (+) True G8376
TU10338 lncRNA upstream 35581 50148884 ~ 50149121 (+) True G8375
TU10337 lncRNA upstream 36507 50147876 ~ 50148195 (+) True G8374
TU10336 lncRNA upstream 38879 50145371 ~ 50145823 (+) True G8373
TU10383 lncRNA downstream 49184 50236677 ~ 50237721 (+) False AMCG00004463
TU10416 lncRNA downstream 96932 50284425 ~ 50288071 (+) True G8443
TU10499 lncRNA downstream 507731 50695224 ~ 50695567 (+) True G8509
TU10533 lncRNA downstream 571582 50759075 ~ 50759360 (+) True G8538
TU10616 lncRNA downstream 783463 50970956 ~ 50971302 (+) True G8596
AMCG00004458 mRNA upstream 48868 50121429 ~ 50135834 (+) True AMCG00004458
AMCG00004455 mRNA upstream 152360 50004310 ~ 50032342 (+) True AMCG00004455
AMCG00004453 mRNA upstream 195038 49989275 ~ 49989664 (+) True AMCG00004453
AMCG00004448 mRNA upstream 197211 49984727 ~ 49987491 (+) True AMCG00004448
AMCG00004450 mRNA upstream 201544 49968474 ~ 49983158 (+) True AMCG00004450
AMCG00004462 mRNA downstream 12012 50199505 ~ 50212190 (+) True AMCG00004462
AMCG00004464 mRNA downstream 24724 50212217 ~ 50214554 (+) True AMCG00004464
AMCG00004463 mRNA downstream 49431 50236924 ~ 50243043 (+) True AMCG00004463
AMCG00004468 mRNA downstream 71338 50258831 ~ 50265447 (+) True AMCG00004468
AMCG00004469 mRNA downstream 85049 50272542 ~ 50281575 (+) True AMCG00004469
TU10340 other upstream 26983 50151264 ~ 50157719 (+) True G8377
TU9962 other upstream 1250607 48932450 ~ 48934095 (+) True G8099
TU9841 other upstream 2037546 48146888 ~ 48147156 (+) True G7999
TU9559 other upstream 4216396 45962010 ~ 45968306 (+) True AMCG00004380
TU9000 other upstream 7493593 42688779 ~ 42691109 (+) True G7329
TU10527 other downstream 556298 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 927448 51114941 ~ 51115262 (+) True G8606
TU10780 other downstream 1752068 51939561 ~ 51946818 (+) True AMCG00004501
TU10796 other downstream 1801860 51989353 ~ 52013630 (+) True AMCG00004509
TU11143 other downstream 2995901 53183394 ~ 53183983 (+) True G9012

Expression Profile