RNA id: AMCG00004462


Basic Information

Item Value
RNA id AMCG00004462
length 5632
RNA type mRNA
GC content 0.45
exon number 13
gene id AMCG00004462
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50199505 ~ 50212190 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAATGTAGATCTTGCACGTCCACTAgcgtttttatatatacatattgatcTAGCTTTACTGCAGAGGAAACGTTTGCATTGTATGAATAGGTGTGTTACTTCTTCAATGAACGGGTACTATTTGTGTCAGgttttttctgaaaatgcagTCGTGCCTTCGGTGTATGGATATGCTAACAGTTGTACACTCTTTATCGGCTACTGTTAATATGTCATAAAGACGTAAATCTCTATTTTCACCAGGTATGTCAACTCGGAGACCATTGGCTgTCCTTGCTGCTCTTTGCTTTCACCGCTCCCCCAATCACAAGGAGGCGCTGGCCAGCCCTGCGGTCACCGTTGGACTCCTAGGGTGAATCATTAActggagagaaaaggaaaacagacttGATAACATCCAGAGAGCAAACAGCAGTACTGGCTGGAGACAAACACGgaggaacagaaaaatcagTACAGCAAAGAATCAAGCACCCAAAGAAGCCAGCAAGGGAacgagagaaagaaagagacagtgATAAACACAGTCACCACGGCCCTCTCCTGCAGCAGCCACCTAAAAGCCAGATTAAAACCCAGTCTGACAAATTAGATGTGCTCCACTCTCCAGTGTGTGACCCTTCTTGCCGCCCTTTTTGCACAGGTCTGAAGACATAACTGAGCTGAAGTGTACTCCGTCAGAGCTGGGATTGATTGACCATTAACCCTCCTATTGATTGCACCATTGTTCTCCATGTAACCTTCTCTGCACTGTACCCAGGGCTCAGACACAAAGTTCACTGTGCTCTGCCATATCAGTGTCAGACTCTCAGGCTGGAGCAGAACAGAGCCAGTTGGGCTTAAAGCtgtgttcattttgtactgCTTTTATTCCTCTTCTctactgttttttaaattcttgtACAACATTGTTCTGGAACTGAGGGAACCATGGGGGCGACGGGATATGGATATTACCGCACCACCATTTTTCTGGCCATGTTTGTGGGCTACACGTTGTACTACTTCAACCGAAAGACTTTCTCCTTCGTAATGCCGTCGGTCATGGAAGAGGTTGAACTGGATAAAGATGACTTGGGTCTCATCACCAGCAGTCAGTCGGCAGCCTACGCCATCAGTAAGTTCATCAGTGGCGTGCTGTCAGACCAGATCAGCGCCCGCTGGCTCTTCTCCATCGGCCTTTTCCTGGTGGGCACCATAAACGTGGTCTTCTCCTGGTCCTCCAGTGTGGCCATGTTTGCAGTGCTGTGGTTCATCAACGGGCTGGGCCAGGGTCTGGGCTGGCCACCTTGTGGGAAGGTGCTGCGCAAGTGGTTCGAGCCGTCTCAGTTCGGGACCTGGTGGGCAGTGCTGTCCTGCAGTATGAACCTGGCAGGGGGGCTAGGCCCACTCATCGCCACAGTGATGGCACTCAGCTACAGCTGGAGGACCACATTGTCCCTGTCCGGCTTGGCCTGCATGGTCACTGCCTTCTTCTGCCTGCTGTTCATAAAGAACGAACCCTCTGACGTGGGGCTGGCCAACATCGAGCATGGCAGCAAGAAGGGCAAGCGAGgCCCCTCTAATGATGACAGCACACTGAAGGAGTTCCTCCTATCCCCCTACCTGTGGGTGCTGTCTTTCGGGTATCTTGTGGTGTTTGGGGTGAAGACGGCCTGCACCGACTGGGGGCAGCTCTTCCTCATCCAGGACAAGGCTCAGTCCGCCCTCATGGGCAGCTCTTACATGAGCGCCCTGGAAGTGGGAGGACTGGTGGGCAGTCTGGCCGCAGGATTCCTCTCTGACAGGGCGGTCGCTCGGAATGGTCTGCGAACCCATGGCAATCCTCGCCACAGCCTCTTGCTGTCCATGATGGCTGGGATGTGCTTGTCCATGTATCTTTTCCGGGTTACAATCACCCCCGAAAGCTCCAAGGTTTGGATTCTTACTCTGGGGGCTTTGTTTGGCTTCTCCTCATATGGACCAATCGCTTTGTTCGGGGTGATAGCCAACGAGAGTGCTCCGTCTAATTACTGTGGGACGTCACACGCCATTGTGGCTCTGATGGCCAATGTGGGCGGATTCCTCGCCGGACTCCCCTTCAGCTCCATTGCCAAGCACTACAGCTGGGACGTGGCATTCTGGGTAGCAGAGATCACCTGCGGCATCACGACCATCTGCTTCTTCCTGCTGCGCAACATGCGCACCAAGATGGGCCGGCTGCCCAGGAAGGCAGACTGAATGCAAACCCACCTGCCCCTCAACAGCCAATGAGAAGGGATCGTGTGCTCAACGAACACACTTAGCGTAgcgacacagacacacacattgtttcCCTCCTTTGTCAACGGTTGCTTGGCAGGTTGACTCACAAACCAGTACAAATTCTAGAAATCACAACACTGCCACCCAAGGGCCCCTTGCAAGCTTCACAAGAGGTTTTAGGATTATTTATTGAGGACACAACAATAGCCAAAGTAagaataatagtagtaataatcaTGTTCACGATAATGTACCTTATAACTTCTGTCATACAACTGATCTGTGGCACAGTCATGACTTGTACACATGCGCACCTTTCATTTTACTGTATGTACAAGTCACCTATAAGGAGGGGTCATTAAAAGCATTgtcatggttttaaaatattgaagtcATCTACAGTAAAGATCCCTACCTCCATTTCAAAAGGTGGAGGTATAAAGCTACCTGTATGCCTTTTGAAACACGCACTAGGTACAGTGTCGAGAGTCATCTGCTCGTTTTTTGAGAAGCAGCAAACTGTTTTTTGTGCCTTTATTTTACCAGCTCCTCATTCATGAGGCTTCCATCTATTCAGTACTAGGCCTGGATTCAATCCAAACTAAACCCACCTGCTAATCCTAAATCCAACCCCAGTCAGTGCTTGAGTGCCGCACCATGGTTTTATTTGGAAGTGACAGCTCATATGCACTGTGTGGGCTCCACAGTTTGTCACAGTATGTGAGTTGTGTTGTTAGGTATGTTGTCATGCAGCTCTTTTCTGAACAACAGACCAAagaaatttaaagaaaaaaacacaaaggagaCCACGGCACATTTTATCTGAAATTAcctgatgttttaatttgtatcaatGCACtcaattggaaaaaaaaggaCAAGAAAATGACTTATTTTTTACTTGTAAATTATTTCTGTTTACAATCATGAGACAGAGTTAGCACTGTGGTGTAGACATAAGAATATAGTATTTTAATCTATTGTAATTCAAAGCTGTTGACAGTGTGTTTGAAAGagaagtgttattttgttttcatcatctCAGTGTTAACTGGTGAACCACTGGATTTAAAGGGATAGTCACACATACATGTggttttccagttttattctCAAAGGATTACATATGTGTACTGTACAATGACAATGGAAAATGATTCATGACATGAATGAATCACATTGCTGCACATTTGCCAGATACACTTTATTAATCCACCTTCACCTCCATCCTAGAGATCAATAACTTAAGTCTCCACTAAAGGGGTGCATCTTATCTCTCAATCAGTCAGTGCCTAAGTCCCTGACTGTCCCAgttactgattaaaataaatataggccCAGATTCTTAATCTAAACTTCAACCCATGCTGCAACTCCCAATTCCAGTCTCCAGTACGTGGCTTTTAATGTCATATATGCATGAAGCAGACAAACAGAGCTGGATTCAAGTATCGGGCTTAGATTTGGAATATGCCACTGCCATTTGTGtcaaagtttttaattaaactggaatGTAAATAATCAGATTAAGGAATGTGTTTAAAATCTACAAAAGGGAAATGAATTTGAACAAGCACCACAACTGGATTGCCCTGTGTTATTGTGAATATGAAAACCTTGCCAGAACTAAGTCATCTATAGACAAAAAGCTTTATTTCTTCCACTTCCACCCTCTcaactgttattttaattaactgttttCCTGTGACTATAGTTTTAAAAGaatacttttaaatttaaaatcaaagtagctattttttttaaattgccagTGTATTTATAATGACTGTACAAAACTAAGTCATTCAGACACTGTATACAGAGAACTAACACTAATAAAGTGTCACAGCCATGTGGTTTAAATTTGGTTTGTCTCTGTGTCCATCCTTTCTTTTCCTTGATAGTACCTTTAATAATGCATAGGAAAATTTCAGAACATTTCCAAATTgagattcagtttttttttttaatgcagatatTTGGAAATCCTACTTAACAGGTTTCCTGAAATGCAATAACCTCTTAGTCTTTGCATAGGGgcaacacataaatacaaatcagattTATTGTAGGAGCAGTTTTTGCGGTGTTAACAGAACCCACTACACAAAGCTAATGACAGTCAATGGAAAGGCTGTATGTAGCAGCTGTAGAACATCACATGATTAGACAAGGCAAATTACTTCTAggtactttatttatacattatttacagattCGTATTCAAGGGAACTTgcacattcatatttacaatGCAGTGTGAAGACCACAAAAGAGTTTAGGTTGATGGAGGCAGATATCAGGTATGGTTttagttcacacacacacaaaaatttAGTTTTACAAAGCCCAAGATCACTTTGGACgattaagtttaatttaataggACTCTTTAGGATAtcatattttcttgtattttaaaaggataaGACTTTAAATTATCTCCAGTGAGGCAGGCTGCAGCTTTTCACCCCATATCCACAAATCAGCCCAAGTGGTTTTCTTCATACAGAGTTGAGAATTGCTTCACACAAAACCCCAGAAACGGGATCCCGCTGGCTCACTGCACCTGCTCTCAGCCCCACACTTGATCACGACCCTGGGCCAAACGTCCCCGCTTTCTCTGCAACCTCAAGGGAAGCCTTCAGATTCTGGTCAAAGAGCTCACACCTGATGGGCATCTCCAGAGAGTAAAAGGGGTTTTTGAGAGCGAAGTCAGAATAGATCTCGTAGATCTTTCGCAGCAGAGCATCAATCCCAGCCTGTCGAGGGTCTGCCAGCACTATGAACTTTATACCTGTGAGCGTCTGGAAGCAGTGCAGTTTAAACGTGTCAGTCTCCAGCATTTCAATCCCAGAGCTTCCCACCTCGGGCGACAACTGGGAGCCGATGGCAAACAGCCtgTGAAACATGGAGGCCAGCATCAGTTTCTCATTGGAGCTCAGTCGTGCCCGGCCGAACCGGATAGAGACGGGGTAGTTGGCCGGATCCTTCAGGTACTCGATGATCTCCTTCCCGTCTCCCGTGTACCTCCCGTTGACATCCACGCCGTTAATGGAGAGCACGGCATGGCCCACTCGGATCCCGTCCCGCTGGCCAAAGGAAACGATCACCCTTTCATCGTGGGTCTTCAGGACCAGATCCAAGGGGTAGCTGAAAGTCTTTTCGGCCTCTGCACGGGGCACGTAGTTGTCATATTGGTAGATTAATCCACCGGCTTTATTTACGACGTAAACACTGAAAATCGCCATGTTTACACGGACGCTCCTCCCCAGCTCACTGCATTACGTCTCTGCCGGAAAGGGCGTTGCTCTACAGTAAagcactacatttcccagaaacCCCTCGGGTCCGCCTGTTAAACTTCCGCGTTTCACGGATGTGCG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K08171 SLC37A4; MFS transporter, OPA family, solute carrier family 37 (glycerol-6-phosphate transporter), member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10343 lncRNA upstream 27554 50171520 ~ 50171951 (+) True G8380
TU10339 lncRNA upstream 49963 50149325 ~ 50149542 (+) True G8376
TU10338 lncRNA upstream 50384 50148884 ~ 50149121 (+) True G8375
TU10337 lncRNA upstream 51310 50147876 ~ 50148195 (+) True G8374
TU10336 lncRNA upstream 53682 50145371 ~ 50145823 (+) True G8373
TU10383 lncRNA downstream 24487 50236677 ~ 50237721 (+) False AMCG00004463
TU10416 lncRNA downstream 72235 50284425 ~ 50288071 (+) True G8443
TU10499 lncRNA downstream 483034 50695224 ~ 50695567 (+) True G8509
TU10533 lncRNA downstream 546885 50759075 ~ 50759360 (+) True G8538
TU10616 lncRNA downstream 758766 50970956 ~ 50971302 (+) True G8596
AMCG00004459 mRNA upstream 12012 50184702 ~ 50187493 (+) True AMCG00004459
AMCG00004458 mRNA upstream 63671 50121429 ~ 50135834 (+) True AMCG00004458
AMCG00004455 mRNA upstream 167163 50004310 ~ 50032342 (+) True AMCG00004455
AMCG00004453 mRNA upstream 209841 49989275 ~ 49989664 (+) True AMCG00004453
AMCG00004448 mRNA upstream 212014 49984727 ~ 49987491 (+) True AMCG00004448
AMCG00004464 mRNA downstream 27 50212217 ~ 50214554 (+) True AMCG00004464
AMCG00004463 mRNA downstream 24734 50236924 ~ 50243043 (+) True AMCG00004463
AMCG00004468 mRNA downstream 46641 50258831 ~ 50265447 (+) True AMCG00004468
AMCG00004469 mRNA downstream 60352 50272542 ~ 50281575 (+) True AMCG00004469
AMCG00004473 mRNA downstream 408789 50620979 ~ 50630765 (+) True AMCG00004473
TU10340 other upstream 41786 50151264 ~ 50157719 (+) True G8377
TU9962 other upstream 1265410 48932450 ~ 48934095 (+) True G8099
TU9841 other upstream 2052349 48146888 ~ 48147156 (+) True G7999
TU9559 other upstream 4231199 45962010 ~ 45968306 (+) True AMCG00004380
TU9000 other upstream 7508396 42688779 ~ 42691109 (+) True G7329
TU10527 other downstream 531601 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 902751 51114941 ~ 51115262 (+) True G8606
TU10780 other downstream 1727371 51939561 ~ 51946818 (+) True AMCG00004501
TU10796 other downstream 1777163 51989353 ~ 52013630 (+) True AMCG00004509
TU11143 other downstream 2971204 53183394 ~ 53183983 (+) True G9012

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016711 False 1927 mRNA 0.44 8 NC_007126.7 9297340 ~ 9315566 (+)