RNA id: AMCG00004478


Basic Information

Item Value
RNA id AMCG00004478
length 1014
RNA type mRNA
GC content 0.58
exon number 8
gene id AMCG00004478
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50722025 ~ 50732800 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGAGTCGCAGCTGAAGGCGTTCCGTGTCAAGACCAAGGCGGTGCTGCCCGGCAGCGCCTGGAGCCCTCTAGAGCTGACCCCTGGCCTCCCCCCGGAGCGAGCCGACGTGGTGATCGTGGGCGGTGGGGTGGTGGGATGGTCGGTCGCCTACTGgttgaagaagaaagagaagataCGAGGAGGGGTGCgcgtggtggtggtggagaaaGACCCCACAGTGAGTTGCGGCCGCCACGCTGGGCACTTGGATCCCCTTTTATGGGGTCATTCAGAGCTCAAGCCATCTGGTGGTCTGGAGAACGAGGGCTGGTTTGACCCCTGGACTTTGCTGAACGCTTTCAGATGTAAGGCCATGTCGATGGGGGTGTACCAGTGCTTCGGAGAGGTCACAGGATTTAAGTACTCGCAAAACCAGGCGCAGACAGAAGACGGAGGAGTGGTCGACTTGAAGAGGATTCACCATGCCATCGTACGAATGCCCAACAGTCTTGAGTACCAGCCTGTGGAGTGTGCTATAGTGGTGAACGCATCTGGGGCCCAGTCCGGGAAGGTGGCTGAGCTGGCAGGGATCGGTTTAGGCCCCAAAGACACGATATCCAGCATACCAGTCCCAGTGGAACCCAGGAAAAGGTATATATATGTTATTCATTCCCCGAACGGGCCGGGCTTGGATACACCTTTCCTCATTGACTACAGTGGAGTTTACTGCAGACGGGAAGGTCTGGGGGGCAACTACATCACAGGGATGTCTCCTGAAATGGTGAAGAGTGCCTGGGCAGGCTACTACGACTACAACACCTTCGATCAGAACGGCATCCTGGGGCAGCACCCGCTGGTCAACAATATGTACTTTGCCACAGGATTCAGCGGGCATGGCCTGCAGCAGTCCCCTGCAGTGGGCCGGGCACGATACCGTGGCGTGGCTTCAGATTGCCTGGATATCTCGGCAGCAGCTGCTTTACAGCCCAGCAGGTCCTACAGAGTGACGGGGAAGCCTGTGTGGTACCTGATG

Function

GO: NA

KEGG:

id description
K18166 FOXRED1; FAD-dependent oxidoreductase domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10499 lncRNA upstream 26458 50695224 ~ 50695567 (+) True G8509
TU10416 lncRNA upstream 433954 50284425 ~ 50288071 (+) True G8443
TU10383 lncRNA upstream 484304 50236677 ~ 50237721 (+) False AMCG00004463
TU10343 lncRNA upstream 550074 50171520 ~ 50171951 (+) True G8380
TU10339 lncRNA upstream 572483 50149325 ~ 50149542 (+) True G8376
TU10533 lncRNA downstream 26275 50759075 ~ 50759360 (+) True G8538
TU10616 lncRNA downstream 238156 50970956 ~ 50971302 (+) True G8596
TU10625 lncRNA downstream 381780 51114580 ~ 51114852 (+) True G8605
TU10683 lncRNA downstream 913049 51645849 ~ 51663424 (+) True G8658
TU10839 lncRNA downstream 1358085 52090885 ~ 52091291 (+) True G8764
AMCG00004479 mRNA upstream 12896 50698554 ~ 50709129 (+) True AMCG00004479
AMCG00004476 mRNA upstream 32140 50683804 ~ 50689885 (+) True AMCG00004476
AMCG00004474 mRNA upstream 43675 50673093 ~ 50678350 (+) True AMCG00004474
AMCG00004472 mRNA upstream 51440 50661462 ~ 50670585 (+) True AMCG00004472
AMCG00004473 mRNA upstream 91260 50620979 ~ 50630765 (+) True AMCG00004473
AMCG00004477 mRNA downstream 8588 50741388 ~ 50753432 (+) True AMCG00004477
AMCG00004482 mRNA downstream 55231 50788031 ~ 50792555 (+) True AMCG00004482
AMCG00004485 mRNA downstream 116274 50849074 ~ 50850195 (+) True AMCG00004485
AMCG00004486 mRNA downstream 205213 50938013 ~ 50948526 (+) True AMCG00004486
AMCG00004489 mRNA downstream 587057 51319857 ~ 51326045 (+) True AMCG00004489
TU10340 other upstream 564306 50151264 ~ 50157719 (+) True G8377
TU9962 other upstream 1787930 48932450 ~ 48934095 (+) True G8099
TU9841 other upstream 2574869 48146888 ~ 48147156 (+) True G7999
TU9559 other upstream 4753719 45962010 ~ 45968306 (+) True AMCG00004380
TU9000 other upstream 8030916 42688779 ~ 42691109 (+) True G7329
TU10527 other downstream 10991 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 382141 51114941 ~ 51115262 (+) True G8606
TU10780 other downstream 1206761 51939561 ~ 51946818 (+) True AMCG00004501
TU10796 other downstream 1256553 51989353 ~ 52013630 (+) True AMCG00004509
TU11143 other downstream 2450594 53183394 ~ 53183983 (+) True G9012

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004463 False 2490 mRNA 0.46 11 NC_007121.7 39249035 ~ 39267438 (+)