RNA id: AMCG00004499


Basic Information

Item Value
RNA id AMCG00004499
length 1680
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00004499
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 51963369 ~ 51972205 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTTTCAAATGGGCGGGTAAAAGATGCGAGGCTAAAGCTTTGCGTTGCTTAGCAGCCCCGCACAGCACGCCGCGGCCGAGACGCGTGTGGATTTCCATTTTCCAGAAAGCCAGGATGTCGGTGCCTTTCTCCAACACCCACCTGCGGGTTCCCCGAGGATTCAATACCATCTTGGAGGGGCTGGCCAGGGAGGTCCTGAGAGAGCAGCCCAAGGACATCCCGAGCTTTGCTGCCTCGTATTTCCAGTCCCTGCTCAAAGAGAGAGAAgTAAAGGTCGTGACTCCCACCTGGAAATGCACAATGCTGTGGATGCCACACTCAAATATGCTATTcagatatttctgttttaaacccAAACAGGAAAATCAGACTGATAACAGCGAGGGCCCGGACAAAGACGAAGCCGCGGCGAGGATCCAGGCCGGCTTCCGAGGCTACGCATCCCGGCTGGAAATGAAGAGACTCAAGTCGTCCACCACAGCCCTCAACGAAAAATCATCAGTTAAAGAACAAGGACCTCTTGAAGTCTGTGCTACAGAACTTACTGAACACCTGGATATGTTCGGGGGAGGTCTCGACGCAGAAATCCAGGGGGTTGAAGAGGGGGAGGATGAAGCAAACCAAGACATCTGCAGCGCTGAGCTGAGACTCGAACCCTCTCGTGAAGTGTCATATGGTGGGGTGGCCAATGTGGATATCTGTGGGGAGGAACTGAAGGGGAATGGAGAGGAAATGGAACAGGGAATGGGCAAGGTGGAAGACGATGTAGCTGAACGGGATCTAAGCCTAAATCAAGTGCAAACAAATGACTGGAATCCAGGAGAAGATGAGCATCTGAGAAAGTCAGATGTTGCTGCTGCCTCTGAGCCAGAGGTGgaaaaagaagatgaagaagaaggcTTGGCAGACGATAAATCCGTAAATGAAGCTCTGGAGGAATGTGAAGATGAGTTTGGTGCAGAGACTGAGAACACTCAAGAAAGCGAGGAGGCCCCAGATAGTTCCACTACTGAGGAACCTCATTTGGAGGGAGCGGTCGCAGAACCCGAGTCGAAAGATGGATCTGAAACCATTAGATCCGTAGACGGGACTGTAGAAGGCACCGAGGACAACGTTGCAGATAGTGTTGATACTACTTTGGAGGGAAAGGAATTATCTGAAGCTAAATCAAGTGCTGAAGTCCTCCTCTCCGGAATGGACATGTCACACGTGGATGAAAACTTGGAGAACAAGGAAGAGACTCGGGAAGGGTGCAAGGCCGAGTCTCCAAAGGATGAAGTGATGGACAGTGCAGCCGCCACTGACGTTCGAGATGAAAGAGAACCTGAGGAGGCATCTGAAGCAGAGGATGCAGCTGGCCTTCCCGATGCTGAGGTGAAGGAGAACCCTGCTGAAGATCCCAAATCGGACGTTGAAGATGAGCCAGCTGAAGGACATGGTCTACCAGAGGAAGCCCAAACGGAGCCAGAGGACATGGGGGTAAAGTCGGAAGATCAGTCGCCAGATAAGCCACCCGAAGGCAAATCAGATGAGCTCAAACCCCAGGAAGAAACTGGGGTCTCTGCAGAAGATGTGGCAGAAACCACAGAAGCTGAAGACCAGGAAAAGGCGGAAGTTGAAGGAGTAACGGAAGAGAACTTGAGCACTGAAGTGGGCGCCGACCGCACGGTAGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10683 lncRNA upstream 299945 51645849 ~ 51663424 (+) True G8658
TU10625 lncRNA upstream 848517 51114580 ~ 51114852 (+) True G8605
TU10616 lncRNA upstream 992067 50970956 ~ 50971302 (+) True G8596
TU10533 lncRNA upstream 1204009 50759075 ~ 50759360 (+) True G8538
TU10499 lncRNA upstream 1267802 50695224 ~ 50695567 (+) True G8509
TU10839 lncRNA downstream 118680 52090885 ~ 52091291 (+) True G8764
TU10851 lncRNA downstream 196111 52168316 ~ 52168540 (+) True G8775
TU10891 lncRNA downstream 296395 52268600 ~ 52268807 (+) True G8808
TU10894 lncRNA downstream 396888 52369093 ~ 52369476 (+) True G8811
TU10899 lncRNA downstream 560524 52532729 ~ 52533018 (+) True G8816
AMCG00004504 mRNA upstream 13120 51948473 ~ 51950249 (+) True AMCG00004504
AMCG00004501 mRNA upstream 16773 51939549 ~ 51946596 (+) False AMCG00004501
AMCG00004498 mRNA upstream 25969 51931349 ~ 51937400 (+) True AMCG00004498
AMCG00004500 mRNA upstream 37893 51919974 ~ 51925476 (+) True AMCG00004500
AMCG00004495 mRNA upstream 111165 51850684 ~ 51852204 (+) True AMCG00004495
AMCG00004509 mRNA downstream 17294 51989499 ~ 52001989 (+) False AMCG00004509
AMCG00004507 mRNA downstream 56534 52028739 ~ 52043455 (+) True AMCG00004507
AMCG00004506 mRNA downstream 76827 52049032 ~ 52057186 (+) True AMCG00004506
AMCG00004508 mRNA downstream 86504 52058709 ~ 52072945 (+) True AMCG00004508
AMCG00004510 mRNA downstream 107465 52079670 ~ 52092210 (+) True AMCG00004510
TU10780 other upstream 16551 51939561 ~ 51946818 (+) True AMCG00004501
TU10626 other upstream 848107 51114941 ~ 51115262 (+) True G8606
TU10527 other upstream 1210020 50743791 ~ 50753349 (+) False AMCG00004477
TU10340 other upstream 1805650 50151264 ~ 50157719 (+) True G8377
TU9962 other upstream 3029274 48932450 ~ 48934095 (+) True G8099
TU10796 other downstream 17148 51989353 ~ 52013630 (+) True AMCG00004509
TU11143 other downstream 1211189 53183394 ~ 53183983 (+) True G9012
TU11164 other downstream 1292102 53264307 ~ 53270070 (+) False AMCG00004546
TU11263 other downstream 1631556 53603761 ~ 53607898 (+) True G9118
TU11273 other downstream 1663834 53636039 ~ 53643598 (+) False AMCG00004563

Expression Profile